sci-libs/nipype: my temporal nipype fork

Package-Manager: portage-2.3.2

sci-libs/nipype/ChangeLog

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+*nipype-9999 (30 Oct 2016)
+
+  30 Oct 2016; Horea Christian <h.chr@mail.ru> +metadata.xml,
+  +nipype-9999.ebuild:
+  sci-libs/nipype: my temporal nipype fork

sci-libs/nipype/metadata.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <maintainer type="person">
+    <email>horea.christ@gmail.com</email>
+    <name>Horea Christian</name>
+  </maintainer>
+  <maintainer type="project">
+    <email>sci@gentoo.org</email>
+    <name>Gentoo Science Project</name>
+  </maintainer>
+  <longdescription lang="en">
+	Nipype, an open-source, community-developed initiative under the
+	umbrella of NiPy, is a Python project that provides a uniform interface
+	to existing neuroimaging software and facilitates interaction between
+	these packages within a single workflow. Nipype provides an environment
+	that encourages interactive exploration of algorithms from different
+	packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer),
+	eases the design of workflows within and between packages, and reduces
+	the learning curve necessary to use different packages. Nipype is
+	creating a collaborative platform for neuroimaging software development
+	in a high-level language and addressing limitations of existing pipeline systems.
+</longdescription>
+ <upstream>
+    <remote-id type="sourceforge">nipy</remote-id>
+ </upstream>
+  <use>
+    <flag name="spm">Pull in "Statistical Parametric Mapping" (sci-biology/spm)</flag>
+    <flag name="fsl">Pull in the "FMRIB Software Library" (sci-biology/fsl)</flag>
+    <flag name="afni">Pull in the NIH AFNI software bundle (sci-biology/afni)</flag>
+  </use>
+</pkgmetadata>

sci-libs/nipype/nipype-9999.ebuild

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+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_REQ_USE="threads(+),sqlite"
+
+inherit distutils-r1 git-r3
+
+DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces"
+HOMEPAGE="http://nipy.sourceforge.net/nipype/"
+SRC_URI=""
+EGIT_REPO_URI="https://github.com/TheChymera/nipype"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS=""
+IUSE="test"
+
+DEPEND="
+	dev-python/future[${PYTHON_USEDEP}]
+	dev-python/prov[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	sci-libs/nibabel[${PYTHON_USEDEP}]
+	test? ( dev-python/mock[${PYTHON_USEDEP}] )
+	$(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7)
+	"
+RDEPEND="
+	dev-python/networkx[${PYTHON_USEDEP}]
+	dev-python/pydotplus[${PYTHON_USEDEP}]
+	dev-python/pygraphviz[${PYTHON_USEDEP}]
+	dev-python/traits[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	dev-python/simplejson[${PYTHON_USEDEP}]
+	"
+
+python_prepare_all() {
+	distutils-r1_python_prepare_all
+	EXISTING_REQUIRE="setup_requires=['future', 'configparser']"
+	CORRECTED_REQUIRE="setup_requires=['future']"
+	sed \
+		-e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \
+		-i setup.py \
+		|| die "sed setup.py"
+}
+
+python_test() {
+	nosetests -v || die
+}