diff --git a/sci-libs/nipype/ChangeLog b/sci-libs/nipype/ChangeLog new file mode 100644 index 0000000..d29cc65 --- /dev/null +++ b/sci-libs/nipype/ChangeLog @@ -0,0 +1,5 @@ +*nipype-9999 (30 Oct 2016) + + 30 Oct 2016; Horea Christian +metadata.xml, + +nipype-9999.ebuild: + sci-libs/nipype: my temporal nipype fork diff --git a/sci-libs/nipype/metadata.xml b/sci-libs/nipype/metadata.xml new file mode 100644 index 0000000..3873d5d --- /dev/null +++ b/sci-libs/nipype/metadata.xml @@ -0,0 +1,32 @@ + + + + + horea.christ@gmail.com + Horea Christian + + + sci@gentoo.org + Gentoo Science Project + + + Nipype, an open-source, community-developed initiative under the + umbrella of NiPy, is a Python project that provides a uniform interface + to existing neuroimaging software and facilitates interaction between + these packages within a single workflow. Nipype provides an environment + that encourages interactive exploration of algorithms from different + packages (e.g., SPM, FSL, FreeSurfer, Camino, MRtrix, MNE, AFNI, Slicer), + eases the design of workflows within and between packages, and reduces + the learning curve necessary to use different packages. Nipype is + creating a collaborative platform for neuroimaging software development + in a high-level language and addressing limitations of existing pipeline systems. + + + nipy + + + Pull in "Statistical Parametric Mapping" (sci-biology/spm) + Pull in the "FMRIB Software Library" (sci-biology/fsl) + Pull in the NIH AFNI software bundle (sci-biology/afni) + + diff --git a/sci-libs/nipype/nipype-9999.ebuild b/sci-libs/nipype/nipype-9999.ebuild new file mode 100644 index 0000000..85c3fe8 --- /dev/null +++ b/sci-libs/nipype/nipype-9999.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) +PYTHON_REQ_USE="threads(+),sqlite" + +inherit distutils-r1 git-r3 + +DESCRIPTION="Neuroimaging in Python: Pipelines and Interfaces" +HOMEPAGE="http://nipy.sourceforge.net/nipype/" +SRC_URI="" +EGIT_REPO_URI="https://github.com/TheChymera/nipype" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="" +IUSE="test" + +DEPEND=" + dev-python/future[${PYTHON_USEDEP}] + dev-python/prov[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/setuptools[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + test? ( dev-python/mock[${PYTHON_USEDEP}] ) + $(python_gen_cond_dep 'dev-python/configparser[${PYTHON_USEDEP}]' python2_7) + " +RDEPEND=" + dev-python/networkx[${PYTHON_USEDEP}] + dev-python/pydotplus[${PYTHON_USEDEP}] + dev-python/pygraphviz[${PYTHON_USEDEP}] + dev-python/traits[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/simplejson[${PYTHON_USEDEP}] + " + +python_prepare_all() { + distutils-r1_python_prepare_all + EXISTING_REQUIRE="setup_requires=['future', 'configparser']" + CORRECTED_REQUIRE="setup_requires=['future']" + sed \ + -e "s/${EXISTING_REQUIRE}/${CORRECTED_REQUIRE}/g" \ + -i setup.py \ + || die "sed setup.py" +} + +python_test() { + nosetests -v || die +}