diff --git a/dev-python/nwb-conversion-tools/ChangeLog b/dev-python/nwb-conversion-tools/ChangeLog new file mode 100644 index 0000000..25228b3 --- /dev/null +++ b/dev-python/nwb-conversion-tools/ChangeLog @@ -0,0 +1,6 @@ +*nwb-conversion-tools-0.9.3 (19 Oct 2021) + + 19 Oct 2021; + +files/nwb-conversion-tools-0.9.3-no-git-versioncheck.patch, +metadata.xml, + +nwb-conversion-tools-0.9.3.ebuild: + dev-python/nwb-conversion-tools: new package (DANDI ephys stack) diff --git a/dev-python/nwb-conversion-tools/Manifest b/dev-python/nwb-conversion-tools/Manifest new file mode 100644 index 0000000..c26f42f --- /dev/null +++ b/dev-python/nwb-conversion-tools/Manifest @@ -0,0 +1 @@ +DIST nwb-conversion-tools-0.9.3.tar.gz 8516667 SHA256 4a87c4d014c7737db469acb86bb7f5434bbdc271316f60b1bd3f145258279215 SHA512 24c3c8cd8ae7cdec14a758890cbd6c24b2cc02c6b6468aadb94b5f6ce6ff88feea626e7febc3a9b3ea993019012e0b6bc6d31c91fa3810a0ea92d5625769e955 WHIRLPOOL 27c040d18a84cc41c04397952318d26b9dfe0521b5daaf8c62fea877d55cfeda967fd9664c849c753e0024b1e2b2f7d7dc94bb3e6e2f2bde6991911b5d422e0b diff --git a/dev-python/nwb-conversion-tools/files/nwb-conversion-tools-0.9.3-no-git-versioncheck.patch b/dev-python/nwb-conversion-tools/files/nwb-conversion-tools-0.9.3-no-git-versioncheck.patch new file mode 100644 index 0000000..d86dfee --- /dev/null +++ b/dev-python/nwb-conversion-tools/files/nwb-conversion-tools-0.9.3-no-git-versioncheck.patch @@ -0,0 +1,13 @@ +--- a/setup.py 2021-10-19 07:59:23.483551681 -0400 ++++ b/setup.py 2021-10-19 08:00:20.289169440 -0400 +@@ -22,10 +22,6 @@ + with open(os.path.join(here, req_file)) as f: + install_requires = f.read().strip().split("\n") + +-# Get remote version +-remote_version = subprocess.run(["git", "describe", "--tags"], stdout=subprocess.PIPE).stdout.decode("utf-8").strip() +-assert "." in remote_version +- + setup( + name="nwb-conversion-tools", + version="0.9.3", diff --git a/dev-python/nwb-conversion-tools/metadata.xml b/dev-python/nwb-conversion-tools/metadata.xml new file mode 100644 index 0000000..b9b71ad --- /dev/null +++ b/dev-python/nwb-conversion-tools/metadata.xml @@ -0,0 +1,15 @@ + + + + + gentoo@chymera.eu + Horea Christian + + + sci@gentoo.org + Gentoo Science Project + + + SpikeInterface/spikeinterface + + diff --git a/dev-python/nwb-conversion-tools/nwb-conversion-tools-0.9.3.ebuild b/dev-python/nwb-conversion-tools/nwb-conversion-tools-0.9.3.ebuild new file mode 100644 index 0000000..417ca80 --- /dev/null +++ b/dev-python/nwb-conversion-tools/nwb-conversion-tools-0.9.3.ebuild @@ -0,0 +1,51 @@ +# Copyright 2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +PYTHON_COMPAT=( python3_{8..9} ) +# 3.10 missing on numba and spyking-circus +inherit distutils-r1 + +DESCRIPTION="Create NWB files by converting proprietary formats and adding essential metadata" +HOMEPAGE="https://github.com/catalystneuro/nwb-conversion-tools" +SRC_URI="https://github.com/catalystneuro/nwb-conversion-tools/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64" +IUSE="test" +#RESTRICT="test" + +RDEPEND=" + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/jsonschema[${PYTHON_USEDEP}] + dev-python/lxml[${PYTHON_USEDEP}] + dev-python/natsort[${PYTHON_USEDEP}] + dev-python/neo[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/psutil[${PYTHON_USEDEP}] + dev-python/pynwb[${PYTHON_USEDEP}] + dev-python/pyyaml[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + dev-python/spikeextractors[${PYTHON_USEDEP}] + dev-python/tqdm[${PYTHON_USEDEP}] +" +# also needs: +# spikesorters +# spiketoolkit +# neo == 0.9.0, actually +# roiextractors +DEPEND=" + test? ( + ${RDEPEND} + ) +" +BDEPEND="" + +PATCHES=( + "${FILESDIR}/${PN}-0.9.3-no-git-versioncheck.patch" +) + +distutils_enable_tests pytest