From 96c965c4291eac1ae650b6bb11aef45a3ae3cce3 Mon Sep 17 00:00:00 2001
From: Horea Christian <chr@chymera.eu>
Date: Fri, 10 Jan 2020 19:41:30 +0100
Subject: [PATCH] sci-biology/samri: version bump 0.4.2 ahead of Gentoo Science

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Horea Christian <chr@chymera.eu>
---
 sci-biology/samri/ChangeLog          |  5 +++
 sci-biology/samri/Manifest           |  1 +
 sci-biology/samri/samri-0.4.2.ebuild | 56 ++++++++++++++++++++++++++++
 3 files changed, 62 insertions(+)
 create mode 100644 sci-biology/samri/Manifest
 create mode 100644 sci-biology/samri/samri-0.4.2.ebuild

diff --git a/sci-biology/samri/ChangeLog b/sci-biology/samri/ChangeLog
index f318c6b..34f57e2 100644
--- a/sci-biology/samri/ChangeLog
+++ b/sci-biology/samri/ChangeLog
@@ -1,3 +1,8 @@
+*samri-0.4.2 (10 Jan 2020)
+
+  10 Jan 2020;  <chymera@gentoo.org> +samri-0.4.2.ebuild:
+  sci-biology/samri: version bump 0.4.2 ahead of Gentoo Science
+
   08 Dec 2019;  <chymera@gentoo.org> -Manifest, -samri-0.4.1.ebuild:
   sci-biology/samri: migrated version to Gentoo Science  https://gitweb.gentoo.o
   rg/proj/sci.git/commit/?id=e68c1eb1aea94ee2860d3b9feb079932114904ea
diff --git a/sci-biology/samri/Manifest b/sci-biology/samri/Manifest
new file mode 100644
index 0000000..69cc282
--- /dev/null
+++ b/sci-biology/samri/Manifest
@@ -0,0 +1 @@
+DIST samri-0.4.2.tar.gz 4115783 SHA256 bf2d14a57e153d1dbfdb6471434412a1ab00c92dd8cd4a858fa9c9b7703dfae6 SHA512 cb5853ea0d47a3cfd61a0064a1ab776f34dc5178fbe53d515452c03b5b3b24e39d1fe22f6f75e3918c86aaac7517aac05bc911ea8ffdb5a4c3ef07b5cff63880 WHIRLPOOL dd9f42ec3b5d3280968560f5d81bb8db252f9256ad42f888af1b8ceaed57946febe69d3e6dc11824a9713fa5ae51d62f38e7ee1b333d6f2c7279c76af9b18e32
diff --git a/sci-biology/samri/samri-0.4.2.ebuild b/sci-biology/samri/samri-0.4.2.ebuild
new file mode 100644
index 0000000..e729f5a
--- /dev/null
+++ b/sci-biology/samri/samri-0.4.2.ebuild
@@ -0,0 +1,56 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_6 )
+
+inherit distutils-r1
+
+DESCRIPTION="Small Animal Magnetic Resonance Imaging"
+HOMEPAGE="https://github.com/IBT-FMI/SAMRI"
+SRC_URI="https://github.com/IBT-FMI/SAMRI/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE="labbookdb test"
+KEYWORDS="~amd64"
+
+DEPEND="
+	test? (
+		dev-python/pytest[${PYTHON_USEDEP}]
+		sci-biology/samri_bidsdata
+		sci-biology/samri_bindata
+	)
+"
+RDEPEND="
+	dev-python/argh[${PYTHON_USEDEP}]
+	dev-python/joblib[${PYTHON_USEDEP}]
+	>=dev-python/matplotlib-2.0.2[${PYTHON_USEDEP}]
+	>=dev-python/numpy-1.13.3[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	dev-python/seaborn[${PYTHON_USEDEP}]
+	dev-python/statsmodels[${PYTHON_USEDEP}]
+	media-gfx/blender
+	>=sci-biology/fsl-5.0.9
+	sci-biology/bru2nii
+	sci-biology/mouse-brain-atlases
+	labbookdb? ( sci-libs/labbookdb[${PYTHON_USEDEP}] )
+	sci-libs/nibabel[${PYTHON_USEDEP}]
+	>=sci-libs/nipy-0.4.1[${PYTHON_USEDEP}]
+	>=sci-libs/nipype-1.0.0[${PYTHON_USEDEP}]
+	<=sci-libs/pybids-0.6.5[${PYTHON_USEDEP}]
+	sci-libs/scikits_image[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	sci-biology/ants
+	sci-biology/afni
+	sci-biology/nilearn[${PYTHON_USEDEP}]
+"
+
+S="${WORKDIR}/SAMRI-${PV}"
+
+src_prepare() {
+	sed -i -e "s:/usr:${EPREFIX}/usr:g" `grep -rlI \'/usr/ samri` || die
+	sed -i -e "s:/usr:${EPREFIX}/usr:g" `grep -rlI /usr/ test_scripts.sh` || die
+	distutils-r1_src_prepare
+}