diff --git a/sci-biology/afni/afni-9999.ebuild b/sci-biology/afni/afni-9999.ebuild index 945808a..99a25b9 100644 --- a/sci-biology/afni/afni-9999.ebuild +++ b/sci-biology/afni/afni-9999.ebuild @@ -17,11 +17,11 @@ GIFTI_HASH="5eae81ba1e87ef3553df3b6ba585f12dc81a0030" DESCRIPTION="Advanced Normalitazion Tools for neuroimaging" HOMEPAGE="http://stnava.github.io/ANTs/" SRC_URI=" - https://github.com/leej3/gts/archive/${GTS_HASH}.tar.gz https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz " -EGIT_REPO_URI="https://github.com/leej3/afni.git" + #https://github.com/leej3/gts/archive/${GTS_HASH}.tar.gz +EGIT_REPO_URI="https://github.com/TheChymera/afni.git" EGIT_BRANCH="make_some_build_fixes_for_gentoo_packaging" SLOT="0" @@ -41,6 +41,7 @@ RDEPEND=" media-libs/qhull media-video/mpeg-tools sci-libs/gsl + sci-libs/gts sys-devel/llvm:* sys-libs/libomp dev-libs/libpthread-stubs @@ -62,8 +63,8 @@ DEPEND=" #Update jpeg-compat to virtual/jpeg:0 # look for xmhtlm + #tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die src_prepare() { - tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die tar xf "${DISTDIR}/${NIFTI_HASH}.tar.gz" || die tar xf "${DISTDIR}/${GIFTI_HASH}.tar.gz" || die cmake_src_prepare @@ -76,19 +77,21 @@ src_configure() { export GIT_REPO_VERSION=3.0.1.1 #export LDFLAGS="-lpthread ${LDFLAGS}" #-CC="$(tc-getCC)" + #-DFETCHCONTENT_SOURCE_DIR_GTS="${WORKDIR}/${P}/gts-${GTS_HASH}" + #-DUSE_SYSTEM_GTS=OFF local mycmakeargs=( -GNinja -DLIBDIR=/usr/$(get_libdir) -DNIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) -DGIFTI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) + -DGIFTI_INSTALL_LIB_DIR=/usr/$(get_libdir) -DAFNI_INSTALL_LIBRARY_DIR=/usr/$(get_libdir) -DCMAKE_INSTALL_LIBDIR=/usr/$(get_libdir) -DCOMP_COREBINARIES=ON -DUSE_SYSTEM_NIFTI=OFF -DUSE_SYSTEM_GIFTI=OFF -DUSE_SYSTEM_XMHTML=OFF - -DUSE_SYSTEM_GTS=OFF - -DFETCHCONTENT_SOURCE_DIR_GTS="${WORKDIR}/${P}/gts-${GTS_HASH}" + -DUSE_SYSTEM_GTS=ON -DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/${P}/nifti_clib-${NIFTI_HASH}" -DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/${P}/gifti_clib-${GIFTI_HASH}" -DCOMP_GUI=ON