From bc8c35f3dbeb3057ff5231d273ebc995f0a1eeda Mon Sep 17 00:00:00 2001 From: Horea Christian Date: Tue, 26 Mar 2019 23:50:23 +0100 Subject: [PATCH 1/2] Marked tests as failing --- sci-visualization/fsleyes/fsleyes-0.27.3.ebuild | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/sci-visualization/fsleyes/fsleyes-0.27.3.ebuild b/sci-visualization/fsleyes/fsleyes-0.27.3.ebuild index 6815d74..d85a302 100644 --- a/sci-visualization/fsleyes/fsleyes-0.27.3.ebuild +++ b/sci-visualization/fsleyes/fsleyes-0.27.3.ebuild @@ -48,6 +48,11 @@ RDEPEND=" sci-visualization/fsleyes-props[${PYTHON_USEDEP}] " +# Tests fail +# https://github.com/pauldmccarthy/fsleyes/issues/16 +# https://github.com/pauldmccarthy/fsleyes/issues/14 +RESTRICT="test" + PATCHES=( "${FILESDIR}/${PN}-0.26.2-fsldir.patch" ) @@ -79,10 +84,5 @@ python_test() { rm tests/test_embed.py rm tests/test_overlay_displayprops.py rm tests/test_resample.py - #rm tests/test_overlay_freesurfermesh.py - #rm tests/test_overlay_giftimesh.py - #rm tests/test_screenshot.py - #rm tests/test_state.py - #rm tests/test_views.py virtx pytest -vv || die } From a864d20c4cf9cd87461add02414f862e35e4c59b Mon Sep 17 00:00:00 2001 From: Horea Christian Date: Fri, 29 Mar 2019 05:24:45 +0100 Subject: [PATCH 2/2] sci-libs/bids-validator: New package ahead of Gentoo Sci Package-Manager: Portage-2.3.62, Repoman-2.3.12 --- sci-libs/bids-validator/ChangeLog | 5 +++ sci-libs/bids-validator/Manifest | 1 + .../bids-validator-1.2.2.ebuild | 33 +++++++++++++++++++ sci-libs/bids-validator/metadata.xml | 20 +++++++++++ 4 files changed, 59 insertions(+) create mode 100644 sci-libs/bids-validator/ChangeLog create mode 100644 sci-libs/bids-validator/Manifest create mode 100644 sci-libs/bids-validator/bids-validator-1.2.2.ebuild create mode 100644 sci-libs/bids-validator/metadata.xml diff --git a/sci-libs/bids-validator/ChangeLog b/sci-libs/bids-validator/ChangeLog new file mode 100644 index 0000000..a8bcb07 --- /dev/null +++ b/sci-libs/bids-validator/ChangeLog @@ -0,0 +1,5 @@ +*bids-validator-1.2.2 (29 Mar 2019) + + 29 Mar 2019; +bids-validator-1.2.2.ebuild, + +metadata.xml: + sci-libs/bids-validator: new package ahead of Gentoo Science diff --git a/sci-libs/bids-validator/Manifest b/sci-libs/bids-validator/Manifest new file mode 100644 index 0000000..413cddd --- /dev/null +++ b/sci-libs/bids-validator/Manifest @@ -0,0 +1 @@ +DIST bids-validator-1.2.2.tar.gz 1877722 SHA256 4a1f3d6f92e2c6d3ce7a1eac95a5653d529a08a90a67570094c8b13123bc9b7b SHA512 91e0838d96ff588bbb1d65bb2ba22b57a1c18022882c520929b3dfcb59f2eccc94887c3a25e3d358d9302fab071bc47e3d3efa6eafe4985be77085217c1ea274 WHIRLPOOL a1c08d4e0c3a514fe0b277635a6fadab1021e6c6e012bb63dbf134b03afabe304b6af1ea59bff79d48dad57653911f8851f5e26dca8d830f907f61ddc25fe98b diff --git a/sci-libs/bids-validator/bids-validator-1.2.2.ebuild b/sci-libs/bids-validator/bids-validator-1.2.2.ebuild new file mode 100644 index 0000000..d18403f --- /dev/null +++ b/sci-libs/bids-validator/bids-validator-1.2.2.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) + +inherit distutils-r1 + +DESCRIPTION="Validator for the Brain Imaging Data Structure" +HOMEPAGE="https://github.com/bids-standard/bids-validator" +SRC_URI="https://github.com/bids-standard/bids-validator/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="" + +DEPEND=" + dev-python/setuptools[${PYTHON_USEDEP}] + " +RDEPEND=" + dev-python/grabbit[${PYTHON_USEDEP}] + dev-python/num2words[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/patsy[${PYTHON_USEDEP}] + dev-python/six[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + " + +S="${WORKDIR}/${P}/${PN}" diff --git a/sci-libs/bids-validator/metadata.xml b/sci-libs/bids-validator/metadata.xml new file mode 100644 index 0000000..415f65c --- /dev/null +++ b/sci-libs/bids-validator/metadata.xml @@ -0,0 +1,20 @@ + + + + + horea.christ@gmail.com + Horea Christian + + + sci@gentoo.org + Gentoo Science Project + + + A limited library of helper functions written in Python, the main + function of which is to determine whether a file path is compliant + with the BIDS specification. + + + bids-standard/bids-validator + +