dev-python/tridesclous: merged in Gentoo ::science
https://gitweb.gentoo.org/proj/sci.git/commit/?id=2197df0e3de174258d330058ca961121c538784c
This commit is contained in:
Horea Christian
parent
4ff007afb4
commit
79728b3b1b
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DIST tridesclous-1.6.4.tar.gz 571689 BLAKE2B c941c159a0aed2f69dd098b5a7073898f305aa04c4db4753fc7de135cf87866fe8857a89b2d1248e3a2dada09229195f2dad557c0c110ac2f061dfe39c8aa257 SHA512 29182af03dc9219c422e37000ceb40787db89408f66b94201bbb2226f97ef251140eafa28a77554aaa1539978c46eece0156d2941c8156212499f544cf42740c
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DIST tridesclous-1.6.6.gh.tar.gz 11798502 BLAKE2B af9eb4d4e899f2a065d37e6daaae9ad04209b3d10c250957985ef3603e5d5727947dafff75adf5bb892a4ccbbf2f575f682bd601afcf36bda48f5f7a2af6ab26 SHA512 b101a8a8c2e95b7eb51b7d24d2708a30421be63d48d5a7047dfa2be3ce0f15ce02ce518d5516d5fae3d040cb0d2037a49afd34fdbd03bc641dc42014d8861d0d
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<?xml version='1.0' encoding='UTF-8'?>
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
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<pkgmetadata>
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<maintainer type="person">
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<email>gentoo@chymera.eu</email>
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<name>Horea Christian</name>
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</maintainer>
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<maintainer type="project">
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<email>sci@gentoo.org</email>
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<name>Gentoo Science Project</name>
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</maintainer>
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<upstream>
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<remote-id type="github">tridesclous/tridesclous</remote-id>
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</upstream>
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</pkgmetadata>
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# Copyright 2021-2023 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{8..10} )
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DISTUTILS_USE_PEP517=setuptools
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inherit distutils-r1
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DESCRIPTION="offline/online spike sorting"
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HOMEPAGE="https://github.com/tridesclous/tridesclous"
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SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64"
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IUSE="gui test"
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RDEPEND="
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<dev-python/numpy-1.24.0[${PYTHON_USEDEP}]
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dev-python/cython[${PYTHON_USEDEP}]
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dev-python/hdbscan[${PYTHON_USEDEP}]
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dev-python/loky[${PYTHON_USEDEP}]
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dev-python/matplotlib[${PYTHON_USEDEP}]
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dev-python/neo[${PYTHON_USEDEP}]
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dev-python/numba
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dev-python/openpyxl[${PYTHON_USEDEP}]
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dev-python/pandas[${PYTHON_USEDEP}]
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dev-python/scipy[${PYTHON_USEDEP}]
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dev-python/seaborn[${PYTHON_USEDEP}]
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dev-python/tqdm[${PYTHON_USEDEP}]
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sci-libs/scikit-learn[${PYTHON_USEDEP}]
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gui? (
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dev-python/PyQt5[${PYTHON_USEDEP}]
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)
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"
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distutils_enable_tests pytest
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# Network sandboxing, this is sadly more than half the test suite :(
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EPYTEST_DESELECT=(
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tridesclous/tests/test_cleancluster.py::test_auto_split
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tridesclous/tests/test_cleancluster.py::test_trash_not_aligned
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tridesclous/tests/test_cleancluster.py::test_auto_merge
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tridesclous/tests/test_cleancluster.py::test_trash_low_extremum
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tridesclous/tests/test_cleancluster.py::test_trash_small_cluster
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tridesclous/tests/test_cluster.py::test_sawchaincut
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tridesclous/tests/test_cluster.py::test_pruningshears
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tridesclous/tests/test_decomposition.py::test_all_decomposition
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tridesclous/tests/test_export.py::test_export
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tridesclous/tests/test_export.py::test_export_catalogue_spikes
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tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor
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tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry
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tridesclous/tests/test_matplotlibplot.py::test_plot_signals
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tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry
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tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms
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tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d
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tridesclous/tests/test_metrics.py::test_all_metrics
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tridesclous/tests/test_metrics.py::test_cluster_ratio
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tridesclous/tests/test_peeler.py::test_peeler_geometry
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tridesclous/tests/test_peeler.py::test_peeler_geometry_cl
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tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue
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tridesclous/tests/test_peeler.py::test_peeler_several_chunksize
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tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor
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tridesclous/tests/test_peeler.py::test_export_spikes
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tridesclous/tests/test_report.py::test_summary_catalogue_clusters
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tridesclous/tests/test_report.py::test_summary_noise
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tridesclous/tests/test_report.py::test_summary_after_peeler_clusters
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tridesclous/tests/test_report.py::test_generate_report
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tridesclous/tests/test_autoparams.py::test_get_auto_params
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tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor
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tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue
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tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude
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tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor
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tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection
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tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps
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tridesclous/tests/test_dataio.py::test_DataIO
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tridesclous/tests/test_dataio.py::test_DataIO_probes
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tridesclous/tests/test_datasets.py::test_download_dataset
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tridesclous/tests/test_datasets.py::test_get_dataset
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tridesclous/tests/test_datasource.py::test_RawDataSource
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tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator
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tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines
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tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks
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tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry
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tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines
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tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width
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tridesclous/tests/test_tools.py::test_fix_prb_file_py2
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)
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python_test() {
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local EPYTEST_IGNORE=(
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tridesclous/online/tests/*
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)
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if use !gui ; then
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local EPYTEST_IGNORE+=(
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tridesclous/gui/*
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)
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fi
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epytest
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}
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# Copyright 2021-2023 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{8..10} )
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DISTUTILS_USE_PEP517=setuptools
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inherit distutils-r1
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DESCRIPTION="offline/online spike sorting"
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HOMEPAGE="https://github.com/tridesclous/tridesclous"
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SRC_URI="https://github.com/tridesclous/tridesclous/archive/refs/tags/${PV}.tar.gz -> ${P}.gh.tar.gz"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64"
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IUSE="gui test"
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RDEPEND="
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<dev-python/numpy-1.24.0[${PYTHON_USEDEP}]
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dev-python/cython[${PYTHON_USEDEP}]
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dev-python/hdbscan[${PYTHON_USEDEP}]
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dev-python/loky[${PYTHON_USEDEP}]
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dev-python/matplotlib[${PYTHON_USEDEP}]
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dev-python/neo[${PYTHON_USEDEP}]
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dev-python/numba
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dev-python/openpyxl[${PYTHON_USEDEP}]
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dev-python/pandas[${PYTHON_USEDEP}]
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dev-python/scipy[${PYTHON_USEDEP}]
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dev-python/seaborn[${PYTHON_USEDEP}]
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dev-python/tqdm[${PYTHON_USEDEP}]
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sci-libs/scikit-learn[${PYTHON_USEDEP}]
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gui? (
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dev-python/PyQt5[${PYTHON_USEDEP}]
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)
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"
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distutils_enable_tests pytest
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# Network sandboxing, this is sadly more than half the test suite :(
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EPYTEST_DESELECT=(
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tridesclous/tests/test_cleancluster.py::test_auto_split
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tridesclous/tests/test_cleancluster.py::test_trash_not_aligned
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tridesclous/tests/test_cleancluster.py::test_auto_merge
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tridesclous/tests/test_cleancluster.py::test_trash_low_extremum
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tridesclous/tests/test_cleancluster.py::test_trash_small_cluster
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tridesclous/tests/test_cluster.py::test_sawchaincut
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tridesclous/tests/test_cluster.py::test_pruningshears
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tridesclous/tests/test_decomposition.py::test_all_decomposition
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tridesclous/tests/test_export.py::test_export
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tridesclous/tests/test_export.py::test_export_catalogue_spikes
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tridesclous/tests/test_jobtools.py::test_run_parallel_signalprocessor
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tridesclous/tests/test_matplotlibplot.py::test_plot_probe_geometry
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tridesclous/tests/test_matplotlibplot.py::test_plot_signals
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tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms_with_geometry
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tridesclous/tests/test_matplotlibplot.py::test_plot_waveforms
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tridesclous/tests/test_matplotlibplot.py::test_plot_features_scatter_2d
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tridesclous/tests/test_metrics.py::test_all_metrics
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tridesclous/tests/test_metrics.py::test_cluster_ratio
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tridesclous/tests/test_peeler.py::test_peeler_geometry
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tridesclous/tests/test_peeler.py::test_peeler_geometry_cl
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tridesclous/tests/test_peeler.py::test_peeler_empty_catalogue
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tridesclous/tests/test_peeler.py::test_peeler_several_chunksize
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tridesclous/tests/test_peeler.py::test_peeler_with_and_without_preprocessor
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tridesclous/tests/test_peeler.py::test_export_spikes
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tridesclous/tests/test_report.py::test_summary_catalogue_clusters
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tridesclous/tests/test_report.py::test_summary_noise
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tridesclous/tests/test_report.py::test_summary_after_peeler_clusters
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tridesclous/tests/test_report.py::test_generate_report
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tridesclous/tests/test_autoparams.py::test_get_auto_params
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tridesclous/tests/test_catalogueconstructor.py::test_catalogue_constructor
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tridesclous/tests/test_catalogueconstructor.py::test_make_catalogue
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tridesclous/tests/test_catalogueconstructor.py::test_ratio_amplitude
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tridesclous/tests/test_catalogueconstructor.py::test_create_savepoint_catalogue_constructor
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tridesclous/tests/test_catalogueconstructor.py::test_feature_with_lda_selection
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tridesclous/tests/test_cataloguetools.py::test_apply_all_catalogue_steps
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tridesclous/tests/test_dataio.py::test_DataIO
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tridesclous/tests/test_dataio.py::test_DataIO_probes
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tridesclous/tests/test_datasets.py::test_download_dataset
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tridesclous/tests/test_datasets.py::test_get_dataset
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tridesclous/tests/test_datasource.py::test_RawDataSource
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tridesclous/tests/test_datasource.py::test_NeoRawIOAggregator
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tridesclous/tests/test_peakdetector.py::test_compare_offline_online_engines
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tridesclous/tests/test_peakdetector.py::test_detect_geometrical_peaks
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tridesclous/tests/test_peakdetector.py::test_peak_sign_symetry
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tridesclous/tests/test_signalpreprocessor.py::test_compare_offline_online_engines
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tridesclous/tests/test_signalpreprocessor.py::test_auto_pad_width
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tridesclous/tests/test_tools.py::test_fix_prb_file_py2
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)
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python_test() {
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local EPYTEST_IGNORE=(
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tridesclous/online/tests/*
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)
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if use !gui ; then
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local EPYTEST_IGNORE+=(
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tridesclous/gui/*
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)
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fi
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epytest
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}
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