sci-libs/scikits_learn: deprecated by Gentoo Main

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=caeeaa26d5b88873af0772f80961052a3a2fcfb2

sci-libs/scikits_learn/ChangeLog

@@ -1,8 +0,0 @@
-*scikits_learn-0.22.1 (08 Apr 2020)
-
-  08 Apr 2020;  <chymera@gentoo.org>
-  +files/scikits_learn-0.18.1-system-cblas.patch,
-  +files/scikits_learn-0.20.2-fix-cdfast.patch, +metadata.xml,
-  +scikits_learn-0.22.1.ebuild:
-  sci-libs/scikits_learn: non-broken version bump ahead of Gentoo Main
-  https://github.com/gentoo/gentoo/pull/15065#issuecomment-610712405

sci-libs/scikits_learn/Manifest

@@ -1 +0,0 @@
-DIST scikit-learn-0.22.1.tar.gz 6942980 SHA256 51ee25330fc244107588545c70e2f3570cfc4017cff09eed69d6e1d82a212b7d SHA512 14191baf3457a3d216d74be34497a3677dd91bb1d3916db6928a4fa1ce93a62c5c9c9879a99fe5317fe088b85b00556087748470a93d3b9d89dbac850a00bc26 WHIRLPOOL e3db86763f1990198137b9ae8035d907ac3d4477c732fd4447dabae084c0dc03a01f5b8b0fed2700dcfa6c0e6e151b9e2c6b7ea5c4a383d44675d082b59fc370

sci-libs/scikits_learn/files/scikits_learn-0.18.1-system-cblas.patch

@@ -1,32 +0,0 @@
-Index: scikit-learn-0.18.1/sklearn/_build_utils/__init__.py
-===================================================================
---- scikit-learn-0.18.1.orig/sklearn/_build_utils/__init__.py
-+++ scikit-learn-0.18.1/sklearn/_build_utils/__init__.py
-@@ -31,7 +31,7 @@ def get_blas_info():
-         return False
- 
-     blas_info = get_info('blas_opt', 0)
--    if (not blas_info) or atlas_not_found(blas_info):
-+    if (not blas_info):
-         cblas_libs = ['cblas']
-         blas_info.pop('libraries', None)
-     else:
-Index: scikit-learn-0.18.1/sklearn/setup.py
-===================================================================
---- scikit-learn-0.18.1.orig/sklearn/setup.py
-+++ scikit-learn-0.18.1/sklearn/setup.py
-@@ -63,14 +63,6 @@ def configuration(parent_package='', top
-                          libraries=libraries,
-                          )
- 
--    # some libs needs cblas, fortran-compiled BLAS will not be sufficient
--    blas_info = get_info('blas_opt', 0)
--    if (not blas_info) or (
--            ('NO_ATLAS_INFO', 1) in blas_info.get('define_macros', [])):
--        config.add_library('cblas',
--                           sources=[join('src', 'cblas', '*.c')])
--        warnings.warn(BlasNotFoundError.__doc__)
--
-     # the following packages depend on cblas, so they have to be build
-     # after the above.
-     config.add_subpackage('linear_model')

sci-libs/scikits_learn/files/scikits_learn-0.20.2-fix-cdfast.patch

@@ -1,42 +0,0 @@
---- scikit-learn-0.20.3.orig/sklearn/linear_model/cd_fast.c	2019-08-09 03:05:05.351926119 +0500
-+++ scikit-learn-0.20.3/sklearn/linear_model/cd_fast.c	2019-08-09 03:05:35.022926006 +0500
-@@ -4889,7 +4889,7 @@
- 
- static PyObject *__pyx_pf_7sklearn_12linear_model_7cd_fast_8enet_coordinate_descent(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_w, float __pyx_v_alpha, float __pyx_v_beta, __Pyx_memviewslice __pyx_v_X, __Pyx_memviewslice __pyx_v_y, int __pyx_v_max_iter, float __pyx_v_tol, PyObject *__pyx_v_rng, int __pyx_v_random, int __pyx_v_positive) {
-   PyObject *__pyx_v_dtype = NULL;
--  void (*__pyx_v_gemv)(enum CBLAS_ORDER, enum CBLAS_TRANSPOSE, int, int, float, float *, int, float *, int, float, float *, int);
-+  void (*__pyx_v_gemv)(CBLAS_ORDER, CBLAS_TRANSPOSE, int, int, float, float *, int, float *, int, float, float *, int);
-   float (*__pyx_v_dot)(int, float *, int, float *, int);
-   void (*__pyx_v_axpy)(int, float, float *, int, float *, int);
-   float (*__pyx_v_asum)(int, float *, int);
-@@ -6279,7 +6279,7 @@
- 
- static PyObject *__pyx_pf_7sklearn_12linear_model_7cd_fast_10enet_coordinate_descent(CYTHON_UNUSED PyObject *__pyx_self, __Pyx_memviewslice __pyx_v_w, double __pyx_v_alpha, double __pyx_v_beta, __Pyx_memviewslice __pyx_v_X, __Pyx_memviewslice __pyx_v_y, int __pyx_v_max_iter, double __pyx_v_tol, PyObject *__pyx_v_rng, int __pyx_v_random, int __pyx_v_positive) {
-   PyObject *__pyx_v_dtype = NULL;
--  void (*__pyx_v_gemv)(enum CBLAS_ORDER, enum CBLAS_TRANSPOSE, int, int, double, double *, int, double *, int, double, double *, int);
-+  void (*__pyx_v_gemv)(CBLAS_ORDER, CBLAS_TRANSPOSE, int, int, double, double *, int, double *, int, double, double *, int);
-   double (*__pyx_v_dot)(int, double *, int, double *, int);
-   void (*__pyx_v_axpy)(int, double, double *, int, double *, int);
-   double (*__pyx_v_asum)(int, double *, int);
-@@ -16246,8 +16246,8 @@
-   CYTHON_UNUSED float (*__pyx_v_asum)(int, float *, int);
-   void (*__pyx_v_copy)(int, float *, int, float *, int);
-   void (*__pyx_v_scal)(int, float, float *, int);
--  void (*__pyx_v_ger)(enum CBLAS_ORDER, int, int, float, float *, int, float *, int, float *, int);
--  void (*__pyx_v_gemv)(enum CBLAS_ORDER, enum CBLAS_TRANSPOSE, int, int, float, float *, int, float *, int, float, float *, int);
-+  void (*__pyx_v_ger)(CBLAS_ORDER, int, int, float, float *, int, float *, int, float *, int);
-+  void (*__pyx_v_gemv)(CBLAS_ORDER, CBLAS_TRANSPOSE, int, int, float, float *, int, float *, int, float, float *, int);
-   unsigned int __pyx_v_n_samples;
-   unsigned int __pyx_v_n_features;
-   unsigned int __pyx_v_n_tasks;
-@@ -17965,8 +17965,8 @@
-   CYTHON_UNUSED double (*__pyx_v_asum)(int, double *, int);
-   void (*__pyx_v_copy)(int, double *, int, double *, int);
-   void (*__pyx_v_scal)(int, double, double *, int);
--  void (*__pyx_v_ger)(enum CBLAS_ORDER, int, int, double, double *, int, double *, int, double *, int);
--  void (*__pyx_v_gemv)(enum CBLAS_ORDER, enum CBLAS_TRANSPOSE, int, int, double, double *, int, double *, int, double, double *, int);
-+  void (*__pyx_v_ger)(CBLAS_ORDER, int, int, double, double *, int, double *, int, double *, int);
-+  void (*__pyx_v_gemv)(CBLAS_ORDER, CBLAS_TRANSPOSE, int, int, double, double *, int, double *, int, double, double *, int);
-   unsigned int __pyx_v_n_samples;
-   unsigned int __pyx_v_n_features;
-   unsigned int __pyx_v_n_tasks;

sci-libs/scikits_learn/metadata.xml

@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci@gentoo.org</email>
-    <name>Gentoo Science Project</name>
-  </maintainer>
-  <longdescription lang="en">
-  scikits.learn is a python library for machine learning. It aims to
-  implement classic machine learning algorithms while remaining simple
-  and efficient.
-  </longdescription>
-  <upstream>
-    <remote-id type="pypi">scikit-learn</remote-id>
-    <remote-id type="sourceforge">scikit-learn</remote-id>
-  </upstream>
-</pkgmetadata>

sci-libs/scikits_learn/scikits_learn-0.22.1.ebuild

@@ -1,83 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{6,7} )
-
-inherit distutils-r1 flag-o-matic
-
-MYPN="${PN/scikits_/scikit-}"
-MYP="${MYPN}-${PV}"
-
-DESCRIPTION="Python modules for machine learning and data mining"
-HOMEPAGE="http://scikit-learn.org"
-SRC_URI="mirror://pypi/${MYPN:0:1}/${MYPN}/${MYP}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc examples test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-	dev-python/joblib[${PYTHON_USEDEP}]
-	dev-python/matplotlib[${PYTHON_USEDEP}]
-	dev-python/nose[${PYTHON_USEDEP}]
-	dev-python/numpy[lapack,${PYTHON_USEDEP}]
-	sci-libs/scikits[${PYTHON_USEDEP}]
-	sci-libs/scipy[${PYTHON_USEDEP}]
-	virtual/blas:=
-	virtual/cblas:=
-"
-
-BDEPEND="
-	dev-python/cython[${PYTHON_USEDEP}]
-	dev-python/numpy[lapack,${PYTHON_USEDEP}]
-	sci-libs/scipy[${PYTHON_USEDEP}]
-	test? ( dev-python/pytest[${PYTHON_USEDEP}] )
-	virtual/blas:=
-	virtual/cblas:=
-"
-
-S="${WORKDIR}/${MYP}"
-
-python_prepare_all() {
-	# bug #397605
-	[[ ${CHOST} == *-darwin* ]] &&
-		append-ldflags -bundle "-undefined dynamic_lookup" ||
-		append-ldflags -shared
-
-	# remove bundled cblas
-	rm -rf sklearn/src || die "failed to remove bundled cblas"
-
-	distutils-r1_python_prepare_all
-}
-
-python_compile() {
-	distutils-r1_python_compile
-}
-
-python_test() {
-	esetup.py install \
-		--root="${T}/test-${EPYTHON}"
-	pushd "${T}/test-${EPYTHON}/$(python_get_sitedir)" || die > /dev/null
-	pytest -m "not network" -vv || die
-	popd > /dev/null
-	#distutils_install_for_testing
-	#${EPYTHON} -m pytest -v "${BUILD_DIR}/test/lib/sklearn" || die
-}
-
-python_install() {
-	distutils-r1_python_install
-}
-
-python_install_all() {
-	find "${S}" -name \*LICENSE.txt -delete || die
-	distutils-r1_python_install_all
-	if use examples; then
-		dodoc -r examples
-		docompress -x /usr/share/doc/${PF}/examples
-	fi
-
-}