sci-biology/afni: afni version bump ahead of Gentoo Science
Package-Manager: Portage-2.3.79, Repoman-2.3.18 Signed-off-by: Horea Christian <chr@chymera.eu>
This commit is contained in:
Horea Christian
parent
a91802ccab
commit
6bef212520
6
sci-biology/afni/ChangeLog
Normal file
6
sci-biology/afni/ChangeLog
Normal file
@ -0,0 +1,6 @@
|
||||
*afni-19.3.12 (25 Nov 2019)
|
||||
*afni-9999 (25 Nov 2019)
|
||||
|
||||
25 Nov 2019; <chymera@gentoo.org> +afni-19.3.12.ebuild, +afni-9999.ebuild,
|
||||
+metadata.xml:
|
||||
sci-biology/afni: afni version bump ahead of Gentoo Science
|
||||
1
sci-biology/afni/Manifest
Normal file
1
sci-biology/afni/Manifest
Normal file
@ -0,0 +1 @@
|
||||
DIST afni-19.3.12.tar.gz 42337320 SHA256 c2181e365f319f62f292f85562fdffde47cea39028941bd66d5cac0675744c27 SHA512 c4f9303312a89a6e87285646f58223df40b07329cf155bf251a48e8e63302988f103a97363d0666ddd8e9f62f762cf0c219bfc995265b4fe1f1ff5f782025371 WHIRLPOOL cda9340a465051653f0bb6f82d1a0da282dba24ddd159c87b1b54b198dd9208486c11fd8c67367c9e94d8b4042f0298556b222fb1a54074eae1cf054cf5fc9eb
|
||||
72
sci-biology/afni/afni-19.3.12.ebuild
Normal file
72
sci-biology/afni/afni-19.3.12.ebuild
Normal file
@ -0,0 +1,72 @@
|
||||
# Copyright 1999-2019 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
inherit eutils multilib pax-utils toolchain-funcs
|
||||
|
||||
DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
|
||||
HOMEPAGE="http://afni.nimh.nih.gov/"
|
||||
SRC_URI="https://github.com/afni/afni/archive/AFNI_${PV}.tar.gz -> ${P}.tar.gz"
|
||||
|
||||
LICENSE="GPL-3+"
|
||||
SLOT="0"
|
||||
KEYWORDS="~amd64 ~x86"
|
||||
IUSE=""
|
||||
|
||||
RDEPEND="dev-libs/expat
|
||||
media-libs/glu
|
||||
media-libs/netpbm
|
||||
media-libs/qhull
|
||||
media-video/mpeg-tools
|
||||
sci-libs/gsl
|
||||
sys-devel/llvm:*
|
||||
virtual/jpeg:0
|
||||
x11-libs/libGLw
|
||||
x11-libs/libXft
|
||||
x11-libs/libXi
|
||||
x11-libs/libXpm
|
||||
x11-libs/motif[-static-libs]"
|
||||
|
||||
# x11-libs/motif[static-libs] breaks the build.
|
||||
# See upstream discussion
|
||||
# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348
|
||||
|
||||
DEPEND="${RDEPEND}
|
||||
app-shells/tcsh"
|
||||
|
||||
S="${WORKDIR}/${PN}-AFNI_${PV}/src"
|
||||
BUILD="linux_fedora_19_64"
|
||||
BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
|
||||
|
||||
src_prepare() {
|
||||
find -type f -exec sed -i -e "s/-lXp //g" {} +
|
||||
cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
|
||||
# Unbundle imcat
|
||||
sed -e "s/ imcat / /g" \
|
||||
-i Makefile.INCLUDE || die "Could not edit includes files."
|
||||
sed -e "s~CC = /usr/bin/gcc -O2 -m64~CC = $(tc-getCC) \$(CFLAGS)~" \
|
||||
-e "s~CCMIN = /usr/bin/gcc -m64~CCMIN = $(tc-getCC) \$(CFLAGS)~" \
|
||||
-e "s~LD = /usr/bin/gcc~LD = $(tc-getCC)~" \
|
||||
-e "s~AR = /usr/bin/ar~AR = $(tc-getAR)~" \
|
||||
-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
|
||||
-i Makefile || die "Could not edit Makefile"
|
||||
# they provide somewhat problematic makefiles :(
|
||||
sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
|
||||
-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
|
||||
# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
|
||||
find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
|
||||
eapply_user
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
emake -j1 all plugins suma_exec
|
||||
}
|
||||
|
||||
src_install() {
|
||||
emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins
|
||||
emake INSTALLDIR="${ED}/usr/$(get_libdir)" -j1 install_lib
|
||||
for CONFLICT in ${BIN_CONFLICTS[@]}; do
|
||||
rm "${ED}/usr/bin/${CONFLICT}"
|
||||
done
|
||||
}
|
||||
70
sci-biology/afni/afni-9999.ebuild
Normal file
70
sci-biology/afni/afni-9999.ebuild
Normal file
@ -0,0 +1,70 @@
|
||||
# Copyright 1999-2019 Gentoo Authors
|
||||
# Distributed under the terms of the GNU General Public License v2
|
||||
|
||||
EAPI=7
|
||||
|
||||
inherit eutils multilib pax-utils git-r3 toolchain-funcs
|
||||
|
||||
DESCRIPTION="An open-source environment for processing and displaying functional MRI data"
|
||||
HOMEPAGE="http://afni.nimh.nih.gov/"
|
||||
SRC_URI=""
|
||||
EGIT_REPO_URI="https://github.com/AFNI/AFNI"
|
||||
|
||||
LICENSE="GPL-3+"
|
||||
SLOT="0"
|
||||
KEYWORDS=""
|
||||
IUSE=""
|
||||
|
||||
RDEPEND="dev-libs/expat
|
||||
media-libs/glu
|
||||
media-libs/netpbm
|
||||
media-libs/qhull
|
||||
media-video/mpeg-tools
|
||||
sci-libs/gsl
|
||||
sys-devel/llvm:*
|
||||
virtual/jpeg:0
|
||||
x11-libs/libGLw
|
||||
x11-libs/libXft
|
||||
x11-libs/libXi
|
||||
x11-libs/libXpm
|
||||
x11-libs/motif[-static-libs]"
|
||||
|
||||
# x11-libs/motif[static-libs] breaks the build.
|
||||
# See upstream discussion
|
||||
# http://afni.nimh.nih.gov/afni/community/board/read.php?1,85348,85348#msg-85348
|
||||
|
||||
DEPEND="${RDEPEND}
|
||||
app-shells/tcsh"
|
||||
|
||||
S="${WORKDIR}/${P}/src"
|
||||
BUILD="linux_fedora_19_64"
|
||||
BIN_CONFLICTS=(qdelaunay whirlgif djpeg cjpeg qhull rbox count mpeg_encode)
|
||||
|
||||
src_prepare() {
|
||||
find -type f -exec sed -i -e "s/-lXp //g" {} +
|
||||
cp other_builds/Makefile.${BUILD} Makefile || die "Could not copy Makefile"
|
||||
sed -e "s~CC = /usr/bin/gcc -O2 -m64~CC = $(tc-getCC) \$(CFLAGS)~" \
|
||||
-e "s~CCMIN = /usr/bin/gcc -m64~CCMIN = $(tc-getCC) \$(CFLAGS)~" \
|
||||
-e "s~LD = /usr/bin/gcc~LD = $(tc-getCC)~" \
|
||||
-e "s~AR = /usr/bin/ar~AR = $(tc-getAR)~" \
|
||||
-e "s~RANLIB = /usr/bin/ranlib~RANLIB = $(tc-getRANLIB)~" \
|
||||
-i Makefile || die "Could not edit Makefile"
|
||||
# they provide somewhat problematic makefiles :(
|
||||
sed -e "s~ifeq ($(CC),gcc)~ifeq (1,1)~"\
|
||||
-i SUMA/SUMA_Makefile || die "Could not edit SUMA/SUMA_Makefile"
|
||||
# upstream checks if $CC is EXACTLY gcc, else sets variables for Mac
|
||||
find "${S}" -iname "*Makefile*" | xargs sed -e "s~/usr/~${EROOT}/usr/~g;" -i
|
||||
eapply_user
|
||||
}
|
||||
|
||||
src_compile() {
|
||||
emake -j1 all plugins suma_exec
|
||||
}
|
||||
|
||||
src_install() {
|
||||
emake INSTALLDIR="${ED}/usr/bin" -j1 install install_plugins
|
||||
emake INSTALLDIR="${ED}/usr/$(get_libdir)" -j1 install_lib
|
||||
for CONFLICT in ${BIN_CONFLICTS[@]}; do
|
||||
rm "${ED}/usr/bin/${CONFLICT}"
|
||||
done
|
||||
}
|
||||
16
sci-biology/afni/metadata.xml
Normal file
16
sci-biology/afni/metadata.xml
Normal file
@ -0,0 +1,16 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
|
||||
<pkgmetadata>
|
||||
<maintainer type="person">
|
||||
<email>chr@chymera.eu</email>
|
||||
<name>Horea Christian</name>
|
||||
</maintainer>
|
||||
<maintainer type="project">
|
||||
<email>sci@gentoo.org</email>
|
||||
<name>Gentoo Science Project</name>
|
||||
</maintainer>
|
||||
<longdescription>
|
||||
Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying
|
||||
functional MRI data—a technique for mapping human brain activity.
|
||||
</longdescription>
|
||||
</pkgmetadata>
|
||||
Loading…
x
Reference in New Issue
Block a user