diff --git a/sci-biology/ants/ChangeLog b/sci-biology/ants/ChangeLog index a2f159a..a6e2e47 100644 --- a/sci-biology/ants/ChangeLog +++ b/sci-biology/ants/ChangeLog @@ -1,3 +1,7 @@ + 25 Nov 2019; -ants-2.3.1_p20191013.ebuild: + sci-biology/ants: migrated version bump to Gentoo Scinece https://gitweb.gent + oo.org/proj/sci.git/commit/?id=402183f38c721910fe038ed4ce04e0a98a37c584 + 17 Oct 2019; ants-9999.ebuild: sci-biology/ants: patch merged by ANTs upstream diff --git a/sci-biology/ants/ants-2.3.1_p20191013.ebuild b/sci-biology/ants/ants-2.3.1_p20191013.ebuild deleted file mode 100644 index 5dd2c81..0000000 --- a/sci-biology/ants/ants-2.3.1_p20191013.ebuild +++ /dev/null @@ -1,72 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -CMAKE_MAKEFILE_GENERATOR="emake" - -inherit cmake-utils git-r3 multilib - -DESCRIPTION="Advanced Normalitazion Tools for neuroimaging" -HOMEPAGE="http://stnava.github.io/ANTs/" -SRC_URI=" - test? ( - http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz - ) -" -EGIT_REPO_URI="https://github.com/stnava/ANTs.git" -EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="~amd64 ~x86" -IUSE="test vtk" - -DEPEND=" - vtk? ( - ~sci-libs/itk-5.0.1[vtkglue] - sci-libs/vtk - ) - !vtk? ( ~sci-libs/itk-5.0.1 ) -" -RDEPEND="${DEPEND}" - -PATCHES=( - "${FILESDIR}/${P}-logic.patch" - "${FILESDIR}/${P}-paths.patch" -) - -src_unpack() { - git-r3_src_unpack - if use test; then - mkdir -p "${S}/.ExternalData/MD5" || die "Could not create test data directory." - tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/" > /dev/null || die "Could not unpack test data." - fi -} - -src_configure() { - local mycmakeargs=( - -DUSE_SYSTEM_ITK=ON - -DITK_DIR="/usr/include/ITK-5.0/" - -DBUILD_TESTING="$(usex test ON OFF)" - -DUSE_VTK=$(usex vtk ON OFF) - -DUSE_SYSTEM_VTK=$(usex vtk ON OFF) - ) - use vtk && mycmakeargs+=( - -DVTK_DIR="/usr/include/vtk-8.1/" - ) - use test && mycmakeargs+=( - -DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5" - ) - cmake-utils_src_configure -} - -src_install() { - BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build" - cmake-utils_src_install - cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found" - dobin *.sh - dodir /usr/$(get_libdir)/ants - install -t "${D}"/usr/$(get_libdir)/ants * || die - doenvd "${FILESDIR}"/99ants -} diff --git a/sci-biology/samri_bidsdata/ChangeLog b/sci-biology/samri_bidsdata/ChangeLog deleted file mode 100644 index 0239043..0000000 --- a/sci-biology/samri_bidsdata/ChangeLog +++ /dev/null @@ -1,4 +0,0 @@ -*samri_bidsdata-0.3 (25 Oct 2019) - - 25 Oct 2019; +metadata.xml, +samri_bidsdata-0.3.ebuild: - sci-biology/samri_bidsdata: version bump 0.3 diff --git a/sci-biology/samri_bidsdata/Manifest b/sci-biology/samri_bidsdata/Manifest deleted file mode 100644 index 10959c3..0000000 --- a/sci-biology/samri_bidsdata/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST samri_bidsdata-0.3.tar.xz 11498387144 SHA256 6d8d01f100793bb930d531630c8c1badcef66e90878421bf75a2910195271836 SHA512 bed72df1e5288c0597168f3100b4e839cee869173217df0f3cbdc47ea5b5167d4fcd7f1e8efa681a723bd47d017e6a502a2acf4ce2b225487fff7b8911aa0ff1 WHIRLPOOL b6b53c78ececd4bb2ca3f0cbfd1ed35f4bd592f25b140651c5ced5df407466e47e294344972a48eae09ce529970b34dc04d118bf284bb7f97c66d6acdfce0fa1 diff --git a/sci-biology/samri_bidsdata/metadata.xml b/sci-biology/samri_bidsdata/metadata.xml deleted file mode 100644 index 5d9ef7d..0000000 --- a/sci-biology/samri_bidsdata/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - - - horea.christ@gmail.com - Horea Christian - - - sci@gentoo.org - Gentoo Science Project - - - Larger BIDS example data package for sci-biology/samri. - - diff --git a/sci-biology/samri_bidsdata/samri_bidsdata-0.3.ebuild b/sci-biology/samri_bidsdata/samri_bidsdata-0.3.ebuild deleted file mode 100644 index 0a94ae3..0000000 --- a/sci-biology/samri_bidsdata/samri_bidsdata-0.3.ebuild +++ /dev/null @@ -1,23 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="BIDS-formatted example mouse brain data for SAMRI" -HOMEPAGE="https://github.com/IBT-FMI/SAMRI" -SRC_URI=" - http://chymera.eu/distfiles/${P}.tar.xz - " - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND="" -DEPEND="" - -src_install() { - insinto "/usr/share/${PN}" - doins -r * -} diff --git a/sci-biology/samri_bindata/ChangeLog b/sci-biology/samri_bindata/ChangeLog deleted file mode 100644 index ffc4111..0000000 --- a/sci-biology/samri_bindata/ChangeLog +++ /dev/null @@ -1,4 +0,0 @@ -*samri_bindata-0.3 (17 Oct 2019) - - 17 Oct 2019; +metadata.xml, +samri_bindata-0.3.ebuild: - sci-biology/samri_bindata: version bump ahead of Gentoo Science diff --git a/sci-biology/samri_bindata/Manifest b/sci-biology/samri_bindata/Manifest deleted file mode 100644 index 6135e2e..0000000 --- a/sci-biology/samri_bindata/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST samri_bindata-0.3.tar.xz 1878468940 SHA256 1ebbaad697d3fdf59978ea2bab55c66759642886c3c4b4ad4c7dfc76cdad4157 SHA512 069c0d84ea651156c38062eea409109aaf00c0b2ef52e2e77e205935ecda5d84b047f8b7f36eaf26526f9d720df514ffe3fa494a0742447db9212916c1347ce2 WHIRLPOOL 65ca37ea6ef67e2e1eb5242267b15643bfa3c43c9ec667633cdaa90e9cbf7a054d233d593ffeafc0ad719ccdebced4703ca47213083047f058d1e90ad1fe1eac diff --git a/sci-biology/samri_bindata/metadata.xml b/sci-biology/samri_bindata/metadata.xml deleted file mode 100644 index 32dc63d..0000000 --- a/sci-biology/samri_bindata/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ - - - - - horea.christ@gmail.com - Horea Christian - - - sci@gentoo.org - Gentoo Science Project - - - Larger binary testing data package for sci-biology/samri. - - diff --git a/sci-biology/samri_bindata/samri_bindata-0.3.ebuild b/sci-biology/samri_bindata/samri_bindata-0.3.ebuild deleted file mode 100644 index 798e01c..0000000 --- a/sci-biology/samri_bindata/samri_bindata-0.3.ebuild +++ /dev/null @@ -1,23 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -DESCRIPTION="ParaVision Mouse, Rat, and Lemur Testing Data for SAMRI" -HOMEPAGE="https://github.com/IBT-FMI/SAMRI" -SRC_URI=" - http://chymera.eu/distfiles/${P}.tar.xz - " - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND="" -DEPEND="" - -src_install() { - insinto "/usr/share/${PN}" - doins -r * -}