Added ants packages
This commit is contained in:
Horea Christian
parent
b131d90ce5
commit
633a5877b4
@ -1 +1 @@
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DIST 84cf0e06646142e0aa4c3d3324a62701 46161 SHA256 6c40c155a97d383438bc8a66eeb96df51517502bab0b1e8670711c141e71f689 SHA512 20942c444831f9dd71d41809acf0eac6fb351bda9a6e2d6826a645121b09d781a7feacdcd5edf4b7e9708f9e5de380bdfdfcb9f7c4b25fa1a03d506d817c3e1d WHIRLPOOL 5c772213fe6ad3c7a032a61024188a1eaeed93137967e2996cd3ceaf39538e9a522b5e8cdf8826816ba2727191bed510b7616056ab32e95d13bcdef0ef12ced9
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DIST ants_testdata-2.3.1_p20191013.tar.xz 25056144 SHA256 583db72588a110dba2c798325dbdad79165b7973f3974b5f90decdbaddd01ee4 SHA512 5a636f11952355be3c85d4a36faa84409bace15a7fcd675b20bc8eee83f1969773f6fe5cde31cb7c46bd1baeca21dc8324b1007e6126717f1653bdeb906c8e50 WHIRLPOOL 1d8f58f1f3b61f1f7d16716180d8e9d48e51a686c6df3531bc7a1317ce133c895b23c6e3f5f24b53060adea037d86cf869d9236c71d9a23361ea2408724a9298
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@ -1,49 +0,0 @@
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# Copyright 1999-2019 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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inherit cmake-utils git-r3 multilib
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MY_HASH="84cf0e06646142e0aa4c3d3324a62701"
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DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
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HOMEPAGE="http://stnava.github.io/ANTs/"
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SRC_URI="http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&checksum=${MY_HASH} -> ${MY_HASH}"
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EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
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EGIT_COMMIT="1d2e5bf497cd71667d6f7d79ff858387c08bb93e"
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SLOT="0"
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LICENSE="BSD"
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KEYWORDS="~amd64 ~x86"
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IUSE="test"
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DEPEND=">=dev-util/cmake-3.10.3"
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RDEPEND="
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sci-libs/vtk
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>=sci-libs/itk-5.0_rc1
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"
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#src_prepare() {
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#}
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src_configure() {
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local mycmakeargs=(
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-DITK_DIR="/usr/include/ITK-5.0/"
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-DUSE_SYSTEM_ITK=ON
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-DUSE_SYSTEM_VTK=ON
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-DBUILD_TESTING="$(usex test ON OFF)"
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)
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cmake-utils_src_configure
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cp "../../distdir/84cf0e06646142e0aa4c3d3324a62701" "../${P}_build/ANTS-build"
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}
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src_install() {
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cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
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default
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cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
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dobin *.sh
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dodir /usr/$(get_libdir)/ants
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install -t "${D}"usr/$(get_libdir)/ants *
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doenvd "${FILESDIR}"/99ants
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}
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71
sci-biology/ants/ants-2.3.1_p20191013.ebuild
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71
sci-biology/ants/ants-2.3.1_p20191013.ebuild
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@ -0,0 +1,71 @@
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# Copyright 1999-2019 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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CMAKE_MAKEFILE_GENERATOR="emake"
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inherit cmake-utils git-r3 multilib
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DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
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HOMEPAGE="http://stnava.github.io/ANTs/"
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SRC_URI="
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test? (
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http://chymera.eu/distfiles/ants_testdata-${PV}.tar.xz
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)
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"
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EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
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EGIT_COMMIT="f78b2d4a382d3090230641b5ade5da28962dad04"
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SLOT="0"
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LICENSE="BSD"
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KEYWORDS="~amd64 ~x86"
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IUSE="test vtk"
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RDEPEND=""
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DEPEND="
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>=dev-util/cmake-3.10.3
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vtk? (
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~sci-libs/itk-5.0.1[vtkglue]
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sci-libs/vtk
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)
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!vtk? ( ~sci-libs/itk-5.0.1 )
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"
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PATCHES=(
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"${FILESDIR}/${P}-logic.patch"
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"${FILESDIR}/${P}-paths.patch"
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)
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src_prepare () {
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use test && mkdir -p "${S}/.ExternalData/MD5"
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use test && tar xvf "${DISTDIR}/ants_testdata-${PV}.tar.xz" -C "${S}/.ExternalData/MD5/"
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cmake-utils_src_prepare
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}
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src_configure() {
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local mycmakeargs=(
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-DUSE_SYSTEM_ITK=ON
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-DITK_DIR="/usr/include/ITK-5.0/"
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-DBUILD_TESTING="$(usex test ON OFF)"
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-DUSE_VTK=$(usex vtk ON OFF)
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-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
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)
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use vtk && mycmakeargs+=(
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-DVTK_DIR="/usr/include/vtk-8.1/"
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)
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use test && mycmakeargs+=(
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-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
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)
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cmake-utils_src_configure
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}
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src_install() {
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BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
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cmake-utils_src_install
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cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
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dobin *.sh
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dodir /usr/$(get_libdir)/ants
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install -t "${D}"/usr/$(get_libdir)/ants * || die
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doenvd "${FILESDIR}"/99ants
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}
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@ -3,51 +3,68 @@
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EAPI=7
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inherit cmake-utils git-r3 multilib
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CMAKE_MAKEFILE_GENERATOR="emake"
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MY_HASH="84cf0e06646142e0aa4c3d3324a62701"
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inherit cmake-utils git-r3 multilib
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DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
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HOMEPAGE="http://stnava.github.io/ANTs/"
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SRC_URI="http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&checksum=${MY_HASH} -> ${MY_HASH}"
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SRC_URI="
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test? (
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http://chymera.eu/distfiles/ants_testdata-2.3.1_p20191013.tar.xz
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)
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"
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EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
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#EGIT_COMMIT="1d2e5bf497cd71667d6f7d79ff858387c08bb93e"
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SLOT="0"
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LICENSE="BSD"
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KEYWORDS=""
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IUSE="test"
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IUSE="test vtk"
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DEPEND=">=dev-util/cmake-3.10.3"
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RDEPEND="
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sci-libs/vtk
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>=sci-libs/itk-5.0_rc1
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"
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RDEPEND=""
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DEPEND="
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>=dev-util/cmake-3.10.3
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vtk? (
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~sci-libs/itk-5.0.1[vtkglue]
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sci-libs/vtk
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)
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!vtk? ( ~sci-libs/itk-5.0.1 )
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"
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#S="${WORKDIR}/ANTs-${PV}"
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PATCHES=(
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"${FILESDIR}/${P}-logic.patch"
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"${FILESDIR}/${P}-paths.patch"
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)
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src_prepare() {
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pwd
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ln -s
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die
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src_prepare () {
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use test && mkdir -p "${S}/.ExternalData/MD5"
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use test && tar xvf "${DISTDIR}/ants_testdata-2.3.1_p20191013.tar.xz" -C "${S}/.ExternalData/MD5/"
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cmake-utils_src_prepare
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}
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src_configure() {
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local mycmakeargs=(
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-DITK_DIR="/usr/include/ITK-5.0/"
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-DUSE_SYSTEM_ITK=ON
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-DUSE_SYSTEM_VTK=ON
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-DITK_DIR="/usr/include/ITK-5.0/"
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-DBUILD_TESTING="$(usex test ON OFF)"
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-DUSE_VTK=$(usex vtk ON OFF)
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-DUSE_SYSTEM_VTK=$(usex vtk ON OFF)
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)
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use vtk && mycmakeargs+=(
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-DVTK_DIR="/usr/include/vtk-8.1/"
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)
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use test && mycmakeargs+=(
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-DExternalData_OBJECT_STORES="${S}/.ExternalData/MD5"
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)
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cmake-utils_src_configure
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}
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src_install() {
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cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
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default
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BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
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cmake-utils_src_install
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cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
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dobin *.sh
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dodir /usr/$(get_libdir)/ants
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install -t "${D}"usr/$(get_libdir)/ants *
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install -t "${D}"/usr/$(get_libdir)/ants * || die
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doenvd "${FILESDIR}"/99ants
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}
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image analysis. ANTs depends on the Insight ToolKit (ITK), a widely used
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medical image processing library to which ANTs developers contribute.
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</longdescription>
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<use>
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<flag name="vtk">Optional support for a number of surface enabled tools (via sci-libs/vtk).</flag>
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</use>
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</pkgmetadata>
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