From 6127c5592c2753324ddd6f04b1ee498bb87b3e76 Mon Sep 17 00:00:00 2001
From: Horea Christian <chr@chymera.eu>
Date: Tue, 10 Sep 2019 19:29:40 +0200
Subject: [PATCH] Merged in Gentoo Science overlay
https://gitweb.gentoo.org/proj/sci.git/commit/?id=445eb95b61c9b12481b24f962123d0f13e940ab6
---
sci-libs/itk/ChangeLog | 17 --
sci-libs/itk/Manifest | 8 -
...nsformFileReader-TransformFileWriter.patch | 50 -----
...asiNewtonOptimizerv4-wrapping-warnin.patch | 28 ---
...adientDescentOptimizerv4-wrapping-wa.patch | 73 --------
...izerParameterScalesEstimatorTemplate.patch | 30 ---
...0005-make-gdcm-helper-library-static.patch | 11 --
sci-libs/itk/files/ITKModuleRemote.patch | 45 -----
sci-libs/itk/files/nrrdio-linking.patch | 15 --
sci-libs/itk/files/tests.patch | 41 ----
sci-libs/itk/itk-5.0.0.ebuild | 150 ---------------
sci-libs/itk/itk-5.0.1.ebuild | 176 ------------------
sci-libs/itk/itk-5.0_rc1.ebuild | 149 ---------------
sci-libs/itk/metadata.xml | 23 ---
14 files changed, 816 deletions(-)
delete mode 100644 sci-libs/itk/ChangeLog
delete mode 100644 sci-libs/itk/Manifest
delete mode 100644 sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
delete mode 100644 sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
delete mode 100644 sci-libs/itk/files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch
delete mode 100644 sci-libs/itk/files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch
delete mode 100644 sci-libs/itk/files/0005-make-gdcm-helper-library-static.patch
delete mode 100644 sci-libs/itk/files/ITKModuleRemote.patch
delete mode 100644 sci-libs/itk/files/nrrdio-linking.patch
delete mode 100644 sci-libs/itk/files/tests.patch
delete mode 100644 sci-libs/itk/itk-5.0.0.ebuild
delete mode 100644 sci-libs/itk/itk-5.0.1.ebuild
delete mode 100644 sci-libs/itk/itk-5.0_rc1.ebuild
delete mode 100644 sci-libs/itk/metadata.xml
diff --git a/sci-libs/itk/ChangeLog b/sci-libs/itk/ChangeLog
deleted file mode 100644
index db8e06c..0000000
--- a/sci-libs/itk/ChangeLog
+++ /dev/null
@@ -1,17 +0,0 @@
-*itk-5.0.1 (09 Sep 2019)
-
- 09 Sep 2019; <chymera@gentoo.org> +files/ITKModuleRemote.patch,
- +files/tests.patch, +itk-5.0.1.ebuild, -itk-4.13.2.ebuild, itk-5.0.0.ebuild,
- metadata.xml:
- sci-libs/itk: bump to 5.0.1
-
-*itk-5.0_rc1 (18 May 2019)
-
- 18 May 2019; <chymera@gentoo.org>
- +files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch,
- +files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch,
- +files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch,
- +files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch,
- +files/0005-make-gdcm-helper-library-static.patch,
- +files/nrrdio-linking.patch, +itk-5.0_rc1.ebuild, +metadata.xml:
- sci-libs/itk: dep change ahead of Gentoo Science
diff --git a/sci-libs/itk/Manifest b/sci-libs/itk/Manifest
deleted file mode 100644
index 210bb94..0000000
--- a/sci-libs/itk/Manifest
+++ /dev/null
@@ -1,8 +0,0 @@
-DIST ITKGenericLabelInterpolator-5.0.1.zip 157566 SHA256 18a0f078bcfeee15b4d4c6e61fe67188746f15e7d765d029f537c9c1ad8615d0 SHA512 0783ec5b336bba6f89a1e8ecf92bb9a488f331b839c4ccf6ca11e40e530e4a46232d257a8814b14238695275b48ff57d63600c103c49e9b7895c385f756c533c WHIRLPOOL 5fc5e862d3f0a677945e13fcc2213e76a0a028092464d92866c36cb53501a79c5f680d55df7912962a6b8f7b834d2f930ece744e6ad6bd8c35f94ca19ab59f76
-DIST ITKGenericLabelInterpolator_test-5.0.1.zip 430662 SHA256 1fc57394b08c8cb72d145d8779c73f17095a5c32cb7ca6d60c0b3da7307a68cf SHA512 18e2fb9b2ee210250937b4c7d6dd0e5482c1d251413c50df9f3f212261b6f47d8cd120cbb923dc279f1113a86826e629df03c887e0cd41589cfe85c07cbb17a9 WHIRLPOOL 063157fb2c73c22a19894ebc3008647921a7f2c3a521dcf598c7a02a2d99a3aabbeee2c487f30af762892abc631bb89c0a89486b66009089e7ebe4e7fc55ae38
-DIST InsightData-5.0.0.tar.gz 290800449 SHA256 8c29831687ee8bd75292edf1d78c7df889b099a33480f0acc504d1fea4ed010f SHA512 0a2b55971ca04040cd7b9732a66100a848437a36768902bb81a20103232fb25dc4766177a2dba1537e1888b56a7dd1dd5ec93f30273993b826453fe8c36adf14 WHIRLPOOL 6b46ed472fe152159a74443d8616d556613edb62021b2d6123f8c5fa47eb13671940c328c2856f506a31713670bae0672a790ebbcab9740cd2b3fbae03de2cb7
-DIST InsightData-5.0.1.tar.gz 290801718 SHA256 5fc343de9ae8e5fd14ac743a8321f5fb699928c08bf8f426aab7835a92fc805e SHA512 eb766c115049949937d6527937f1f49ef84304a71dc4924581a53173f45c4e5a0c5a0e180550e75ecd840314609580b9d1fe9b2358c5a87c82a2c6aff8e9f50e WHIRLPOOL e123f5e69f4253daa1db2c2f9535cfa00a666a95b80606974b65c5d1f485a6db5656f6db0e9489cd80e550fb3d9c8e10acda7e2d2045497218619bf394a758e9
-DIST InsightData-5.0rc01.tar.gz 290621965 SHA256 c4b6172809fd86ee623311001bdf7b79e801bddb9bbb8cb7123b2e5cc04f5c4f SHA512 0be5568b75017a4c4cbfc4a4e7b0339537cd2dc23d5d5637a95002e040b96f923851bc354f3a1447d3802444a951b62d2ef66ad2a0db0961bf2bd9f47399fd9a WHIRLPOOL 35668bb25fc4fd6db3b63683cb26d62f46467f3304998ec3ddcd93cd55c9532f9701feda6f9e9e14c9d3a695434ce8c3e68ba916b1e26e3bb53df2f8aae7836b
-DIST InsightToolkit-5.0.0.tar.gz 20617888 SHA256 6ef73c8972e775632e4022a3a3158eacd039f095bb660d235b0affb9a9282b38 SHA512 7cbff9e555fe0f351cb83828ef7c1a5fbd698290d53faa438b76192685ca188f7f65a506c31e7d0d637409ea19d56467b6a1177b93b9093055104f2ec031ecd8 WHIRLPOOL a5f97080f0deed2f81e2c0d3bcfc05b9b1351a444eb31072e088ce6001e8ad9573d8d9eb6cc17df874e6e08162099161188aa125559f6bbd4e26ac6c64ef9ed8
-DIST InsightToolkit-5.0.1.tar.gz 20627889 SHA256 613b125cbf58481e8d1e36bdeacf7e21aba4b129b4e524b112f70c4d4e6d15a6 SHA512 f36613ff72c513ded3d32504f71308a94fe75555cf9fd22b77485d1375601f6e1f1539cc5ac82a9e1e229bcf514a88ccb55122a7dfc74a6ae1b6604aa70bd814 WHIRLPOOL 8d3f1b426c894c3ecc63981d60a763d92450b08cb00fb82e5f1afc7d034dd784580e2271ca8dba358e49af14f69a1ac52bf1321c8bcc327d1409002edfafd66a
-DIST v5.0rc01.tar.gz 20944543 SHA256 fa6cd61bc39ccdc53808b9b0df5dd95d63a3c08be130e63ab0f4b77ca9594e46 SHA512 30e327708c7717bb2131911c86802c4104730d146b4263c68ae89384d3f01a6675b3abf5962af14cc7f40984cb1e8eedd911fe0f084a8deb4c79b4239b309728 WHIRLPOOL 6447eccbb17573233f750e3462dadd4c44c177613ca88520787579cc6e10ac523488e44dbf0f3e690a0cc009443b5adccdf62b588bdf6180dbda4a98b7d03cef
diff --git a/sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch b/sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
deleted file mode 100644
index 094ee32..0000000
--- a/sci-libs/itk/files/0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch
+++ /dev/null
@@ -1,50 +0,0 @@
-From d069b7b94287dae15fcaf707775f5dd2bbebcc38 Mon Sep 17 00:00:00 2001
-From: Matt McCormick <matt.mccormick@kitware.com>
-Date: Wed, 5 Feb 2014 15:52:34 -0500
-Subject: [PATCH 1/3] BUG: Wrap TransformFileReader, TransformFileWriter.
-
-Missing CMakeLists.txt in the wrapping directory. Need to explicitly include
-the headers after "Template" was appended to the class name.
-
-Suggested-by: Sami Koho <sami.koho@gmail.com>
-
-Change-Id: I6f994bb18f37d5adf1d0f0311fa73506c41239a7
----
- Modules/IO/TransformBase/wrapping/CMakeLists.txt | 3 +++
- Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap | 2 ++
- Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap | 2 ++
- 3 files changed, 7 insertions(+)
- create mode 100644 Modules/IO/TransformBase/wrapping/CMakeLists.txt
-
-diff --git a/Modules/IO/TransformBase/wrapping/CMakeLists.txt b/Modules/IO/TransformBase/wrapping/CMakeLists.txt
-new file mode 100644
-index 0000000..6072567
---- /dev/null
-+++ b/Modules/IO/TransformBase/wrapping/CMakeLists.txt
-@@ -0,0 +1,3 @@
-+itk_wrap_module(ITKIOTransformBase)
-+itk_auto_load_submodules()
-+itk_end_wrap_module()
-diff --git a/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap b/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
-index 9b52fbc..662df9e 100644
---- a/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
-+++ b/Modules/IO/TransformBase/wrapping/itkTransformFileReader.wrap
-@@ -1,3 +1,5 @@
-+set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
-+itk_wrap_include("itkTransformFileReader.h")
- itk_wrap_class("itk::TransformFileReaderTemplate" POINTER)
- foreach(t ${WRAP_ITK_REAL})
- itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
-diff --git a/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap b/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
-index 4f1ac4a..356aaf3 100644
---- a/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
-+++ b/Modules/IO/TransformBase/wrapping/itkTransformFileWriter.wrap
-@@ -1,3 +1,5 @@
-+set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
-+itk_wrap_include("itkTransformFileWriter.h")
- itk_wrap_class("itk::TransformFileWriterTemplate" POINTER)
- foreach(t ${WRAP_ITK_REAL})
- itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
---
-1.8.5.3
-
diff --git a/sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch b/sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
deleted file mode 100644
index 4c74d54..0000000
--- a/sci-libs/itk/files/0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch
+++ /dev/null
@@ -1,28 +0,0 @@
-From 66d2955fbe5528d9df216c639277d1d2686447e5 Mon Sep 17 00:00:00 2001
-From: Michka Popoff <michkapopoff@gmail.com>
-Date: Fri, 7 Feb 2014 19:24:49 +0100
-Subject: [PATCH 2/3] COMP: Fixed itkQuasiNewtonOptimizerv4 wrapping warnings
-
-The warning :
-/scratch/dashboards/Linux-x86_64-gcc4.4-WrapITK/ITK-build/Wrapping/Modules/ITKOptimizersv4/itkQuasiNewtonOptimizerv4.xml: warning(5): Unknown type type: itk::QuasiNewtonOptimizerv4 [typedef]
-/scratch/dashboards/Linux-x86_64-gcc4.4-WrapITK/ITK-build/Wrapping/Modules/ITKOptimizersv4/itkQuasiNewtonOptimizerv4.xml: warning(4): ITK type not wrapped, or currently not known: itk::QuasiNewtonOptimizerv4Template< double >
----
- .../Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap | 8 +++++++-
- 1 file changed, 7 insertions(+), 1 deletion(-)
-
-diff --git a/Modules/Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap b/Modules/Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap
-index 4a43dd4..7eed11c 100644
---- a/Modules/Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap
-+++ b/Modules/Numerics/Optimizersv4/wrapping/itkQuasiNewtonOptimizerv4.wrap
-@@ -1 +1,7 @@
--itk_wrap_simple_class("itk::QuasiNewtonOptimizerv4" POINTER)
-+set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
-+itk_wrap_include("itkQuasiNewtonOptimizerv4.h")
-+itk_wrap_class("itk::QuasiNewtonOptimizerv4Template" POINTER)
-+ foreach(t ${WRAP_ITK_REAL})
-+ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
-+ endforeach(t)
-+itk_end_wrap_class()
---
-1.8.5.3
-
diff --git a/sci-libs/itk/files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch b/sci-libs/itk/files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch
deleted file mode 100644
index d77345e..0000000
--- a/sci-libs/itk/files/0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch
+++ /dev/null
@@ -1,73 +0,0 @@
-From fced46ce8769b4edc7971ea0928045390b5c3f84 Mon Sep 17 00:00:00 2001
-From: Michka Popoff <michkapopoff@gmail.com>
-Date: Mon, 10 Feb 2014 09:41:42 +0100
-Subject: [PATCH 3/3] COMP: Fixed itkGradientDescentOptimizerv4 wrapping
- warnings
-
-I splitted the 3 wrapping calls in 3 separate files and fixed the wrapping.
-
-The warnings :
-/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml: warning(5): Unknown type type: itk::GradientDescentOptimizerBasev4 [typedef]
-/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml: warning(5): Unknown type type: itk::GradientDescentOptimizerv4 [typedef]
-/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml: warning(5): Unknown type type: itk::ObjectToObjectOptimizerBase [typedef]
-/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml: warning(4): ITK type not wrapped, or currently not known: itk::GradientDescentOptimizerBasev4Template< double >
-/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml: warning(4): ITK type not wrapped, or currently not known: itk::GradientDescentOptimizerv4Template< double >
-/home/kevin/kitware/ITK_Build/Wrapping/Modules/ITKOptimizersv4/itkGradientDescentOptimizerv4.xml: warning(4): ITK type not wrapped, or currently not known: itk::ObjectToObjectOptimizerBaseTemplate< double >
-
-Should also hopefully fix the new error on the dashboard I introduced by fixing the itkQuasiNewtonOptimizerv4 warnings (http://review.source.kitware.com/#/c/14317/)
-/home/kevin/kitware/ITK_Build/Wrapping/Typedefs/itkQuasiNewtonOptimizerv4.i:87: Warning 401: Nothing known about base class 'itk::GradientDescentOptimizerv4Template< float >'. Ignored.
-/home/kevin/kitware/ITK_Build/Wrapping/Typedefs/itkQuasiNewtonOptimizerv4.i:87: Warning 401: Maybe you forgot to instantiate 'itk::GradientDescentOptimizerv4Template< float >' using %template.
-
-Change-Id: I15b6af11690ed6efeaced68f73af5212ab5dc364
----
- .../wrapping/itkGradientDescentOptimizerBasev4.wrap | 7 +++++++
- .../Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap | 10 +++++++---
- .../Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap | 7 +++++++
- 3 files changed, 21 insertions(+), 3 deletions(-)
- create mode 100644 Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerBasev4.wrap
- create mode 100644 Modules/Numerics/Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap
-
-diff --git a/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerBasev4.wrap b/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerBasev4.wrap
-new file mode 100644
-index 0000000..74f5a6c
---- /dev/null
-+++ b/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerBasev4.wrap
-@@ -0,0 +1,7 @@
-+set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
-+itk_wrap_include("itkGradientDescentOptimizerBasev4.h")
-+itk_wrap_class("itk::GradientDescentOptimizerBasev4Template" POINTER)
-+ foreach(t ${WRAP_ITK_REAL})
-+ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
-+ endforeach(t)
-+itk_end_wrap_class()
-diff --git a/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap b/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap
-index d53a176..3236448 100644
---- a/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap
-+++ b/Modules/Numerics/Optimizersv4/wrapping/itkGradientDescentOptimizerv4.wrap
-@@ -1,3 +1,7 @@
--itk_wrap_simple_class("itk::ObjectToObjectOptimizerBase" POINTER)
--itk_wrap_simple_class("itk::GradientDescentOptimizerBasev4" POINTER)
--itk_wrap_simple_class("itk::GradientDescentOptimizerv4" POINTER)
-+set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
-+itk_wrap_include("itkGradientDescentOptimizerv4.h")
-+itk_wrap_class("itk::GradientDescentOptimizerv4Template" POINTER)
-+ foreach(t ${WRAP_ITK_REAL})
-+ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
-+ endforeach(t)
-+itk_end_wrap_class()
-diff --git a/Modules/Numerics/Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap b/Modules/Numerics/Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap
-new file mode 100644
-index 0000000..61b2c44
---- /dev/null
-+++ b/Modules/Numerics/Optimizersv4/wrapping/itkObjectToObjectOptimizerBase.wrap
-@@ -0,0 +1,7 @@
-+set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
-+itk_wrap_include("itkObjectToObjectOptimizerBase.h")
-+itk_wrap_class("itk::ObjectToObjectOptimizerBaseTemplate" POINTER)
-+ foreach(t ${WRAP_ITK_REAL})
-+ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
-+ endforeach(t)
-+itk_end_wrap_class()
---
-1.8.5.3
-
diff --git a/sci-libs/itk/files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch b/sci-libs/itk/files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch
deleted file mode 100644
index 83b3956..0000000
--- a/sci-libs/itk/files/0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch
+++ /dev/null
@@ -1,30 +0,0 @@
-Author: Matt McCormick <matt.mccormick@kitware.com>
-Date: Thu Feb 6 10:26:49 2014 -0500
-
- COMP: Wrap OptimizerParameterScalesEstimatorTemplate.
-
- The class name changed and it became templated. Fixes:
-
- /playpen/blowekamp/MacOSX-WrapITK/ITK-build/Wrapping/Modules/ITKOptimizersv4/itkOptimizerParameterScalesEstimator.xml:
- warning(5): Unknown type type: itk::OptimizerParameterScalesEstimator
- [typedef]
- /playpen/blowekamp/MacOSX-WrapITK/ITK-build/Wrapping/Modules/ITKOptimizersv4/itkOptimizerParameterScalesEstimator.xml:
- warning(4): ITK type not wrapped, or currently not known:
- itk::OptimizerParameterScalesEstimatorTemplate< double >
-
- Change-Id: Ic6b4d6fba10d5d6c7b58de8d842bad6511e1ae7b
-
-diff --git a/Modules/Numerics/Optimizersv4/wrapping/itkOptimizerParameterScalesEstimator.wrap b/Modules/Numerics/Optimizersv4/wrapping/itkOptim
-index efd6a8c..a647ee4 100644
---- a/Modules/Numerics/Optimizersv4/wrapping/itkOptimizerParameterScalesEstimator.wrap
-+++ b/Modules/Numerics/Optimizersv4/wrapping/itkOptimizerParameterScalesEstimator.wrap
-@@ -1 +1,7 @@
--itk_wrap_simple_class("itk::OptimizerParameterScalesEstimator" POINTER)
-+set(WRAPPER_AUTO_INCLUDE_HEADERS OFF)
-+itk_wrap_include("itkOptimizerParameterScalesEstimator.h")
-+itk_wrap_class("itk::OptimizerParameterScalesEstimatorTemplate" POINTER)
-+ foreach(t ${WRAP_ITK_REAL})
-+ itk_wrap_template("${ITKM_${t}}" "${ITKT_${t}}")
-+ endforeach(t)
-+itk_end_wrap_class()
-
diff --git a/sci-libs/itk/files/0005-make-gdcm-helper-library-static.patch b/sci-libs/itk/files/0005-make-gdcm-helper-library-static.patch
deleted file mode 100644
index d760ac7..0000000
--- a/sci-libs/itk/files/0005-make-gdcm-helper-library-static.patch
+++ /dev/null
@@ -1,11 +0,0 @@
-diff --git a/Modules/ThirdParty/GDCM/src/CMakeLists.txt b/Modules/ThirdParty/GDCM/src/CMakeLists.txt
-index e98077c..70f4286 100644
---- a/Modules/ThirdParty/GDCM/src/CMakeLists.txt
-+++ b/Modules/ThirdParty/GDCM/src/CMakeLists.txt
-@@ -1,5 +1,5 @@
- if(ITK_USE_SYSTEM_GDCM)
-- add_library(ITKGDCM ITK-GDCM.cxx)
-+ add_library(ITKGDCM STATIC ITK-GDCM.cxx)
- target_link_libraries(ITKGDCM gdcmDICT gdcmMSFF)
- itk_module_target(ITKGDCM)
- return()
diff --git a/sci-libs/itk/files/ITKModuleRemote.patch b/sci-libs/itk/files/ITKModuleRemote.patch
deleted file mode 100644
index eb13015..0000000
--- a/sci-libs/itk/files/ITKModuleRemote.patch
+++ /dev/null
@@ -1,45 +0,0 @@
-Disable automatic git clone attempt for modules:
-https://github.com/InsightSoftwareConsortium/ITK/issues/1157
-
---- a/CMake/ITKModuleRemote.cmake 2019-08-13 18:10:33.385472767 +0200
-+++ b/CMake/ITKModuleRemote.cmake 2019-08-13 18:12:04.020198966 +0200
-@@ -165,39 +165,4 @@
- set(Module_${_name} ON CACHE FORCE "${_description}")
- endif()
-
-- if(Module_${_name})
-- itk_download_attempt_check(Module_${_name})
-- include(CMakeParseArguments)
-- cmake_parse_arguments(_fetch_options "" "GIT_REPOSITORY;GIT_TAG" "" ${ARGN})
-- find_package(Git)
-- if(NOT GIT_EXECUTABLE)
-- message(FATAL_ERROR "error: could not find git for clone of ${_name}")
-- endif()
-- execute_process(
-- COMMAND "${GIT_EXECUTABLE}" --version
-- OUTPUT_VARIABLE ov
-- OUTPUT_STRIP_TRAILING_WHITESPACE
-- )
-- string(REGEX REPLACE "^git version (.+)$" "\\1" _version "${ov}")
-- if("${_version}" VERSION_LESS 1.6.6)
-- message(FATAL_ERROR "Git version 1.6.6 or later is required.")
-- endif()
--
-- set(REMOTE_GIT_TAG "${_fetch_options_GIT_TAG}")
--
-- if( DEFINED REMOTE_GIT_TAG_${_name} AND NOT "${REMOTE_GIT_TAG_${_name}}" STREQUAL "${_fetch_options_GIT_TAG}")
-- set(REMOTE_GIT_TAG "${REMOTE_GIT_TAG_${_name}}")
-- message(STATUS "NOTE: Using override 'REMOTE_GIT_TAG_${_name}=${REMOTE_GIT_TAG}'\n"
-- " instead of value 'GIT_TAG=${_fetch_options_GIT_TAG}'\n"
-- " specified in file ${ITK_SOURCE_DIR}/Modules/Remote/${_name}.remote.cmake'")
-- endif()
-- set(REMOTE_GIT_TAG_${_name} "${REMOTE_GIT_TAG}" CACHE STRING "Override default GIT_TAG value for remote module ${_name}")
-- mark_as_advanced(REMOTE_GIT_TAG_${_name})
--
-- _fetch_with_git("${GIT_EXECUTABLE}"
-- "${_fetch_options_GIT_REPOSITORY}"
-- "${REMOTE_GIT_TAG}"
-- "${ITK_SOURCE_DIR}/Modules/Remote/${_name}"
-- )
-- endif()
- endfunction()
diff --git a/sci-libs/itk/files/nrrdio-linking.patch b/sci-libs/itk/files/nrrdio-linking.patch
deleted file mode 100644
index a549650..0000000
--- a/sci-libs/itk/files/nrrdio-linking.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-Description: Link libITKNrrdIO with -lm (needed for sqrt)
-Author: Steve Robbins <smr@debian.org>
-Forwarded: no
-
---- insighttoolkit4-4.5.0.orig/Modules/ThirdParty/NrrdIO/src/NrrdIO/CMakeLists.txt
-+++ insighttoolkit4-4.5.0/Modules/ThirdParty/NrrdIO/src/NrrdIO/CMakeLists.txt
-@@ -64,7 +64,7 @@
- ADD_DEFINITIONS(-DTEEM_ZLIB=1)
-
- ADD_LIBRARY(ITKNrrdIO ${nrrdio_SRCS} )
--TARGET_LINK_LIBRARIES(ITKNrrdIO ${ITKZLIB_LIBRARIES})
-+TARGET_LINK_LIBRARIES(ITKNrrdIO ${ITKZLIB_LIBRARIES} -lm)
-
- IF(ITK_LIBRARY_PROPERTIES)
- SET_TARGET_PROPERTIES(ITKNrrdIO PROPERTIES ${ITK_LIBRARY_PROPERTIES})
diff --git a/sci-libs/itk/files/tests.patch b/sci-libs/itk/files/tests.patch
deleted file mode 100644
index c24714e..0000000
--- a/sci-libs/itk/files/tests.patch
+++ /dev/null
@@ -1,41 +0,0 @@
-Known to fail by upstream:
-https://github.com/InsightSoftwareConsortium/ITK/issues/1212#issuecomment-527998115
-
---- a/Modules/Bridge/VtkGlue/test/CMakeLists.txt 2019-09-09 00:45:14.736032139 +0200
-+++ b/Modules/Bridge/VtkGlue/test/CMakeLists.txt 2019-09-09 00:49:42.183935497 +0200
-@@ -7,8 +7,6 @@
- if(NOT VTK_RENDERING_BACKEND STREQUAL "None")
- list(APPEND ITKVtkGlueTests
- itkVtkMedianFilterTest.cxx
-- itkVtkConnectedComponentImageFilterTest.cxx
-- QuickViewTest.cxx
- # ### runViewImage ###
- # No test generated. Use it for view images (2D or 3D) with:
- # ITKVtkGlueTestDriver runViewImage image_file
-@@ -40,26 +38,3 @@
- NAME itkVTKImageToImageFilterTest
- COMMAND ITKVtkGlueTestDriver
- itkVTKImageToImageFilterTest)
--
--if(NOT VTK_RENDERING_BACKEND STREQUAL "None")
-- itk_add_test(
-- NAME itkVtkMedianImageFilterTest
-- COMMAND ITKVtkGlueTestDriver
-- itkVtkMedianFilterTest DATA{${ITK_DATA_ROOT}/Input/cthead1.png} 2)
-- set_property(TEST itkVtkMedianImageFilterTest APPEND PROPERTY LABELS REQUIRES_DISPLAY)
--
-- itk_add_test(
-- NAME QuickViewTest
-- COMMAND ITKVtkGlueTestDriver
-- --compare DATA{Baseline/QuickViewTest.png,:}
-- ${ITK_TEST_OUTPUT_DIR}/QuickViewTest0.png
-- --compareNumberOfPixelsTolerance 1500
-- QuickViewTest DATA{${ITK_DATA_ROOT}/Input/peppers.png} ${ITK_TEST_OUTPUT_DIR})
-- set_property(TEST QuickViewTest APPEND PROPERTY LABELS REQUIRES_DISPLAY)
--
-- itk_add_test(
-- NAME itkVtkConnectedComponentImageFilterTest
-- COMMAND ITKVtkGlueTestDriver
-- itkVtkConnectedComponentImageFilterTest DATA{${ITK_DATA_ROOT}/Input/cthead1.png})
-- set_property(TEST itkVtkConnectedComponentImageFilterTest APPEND PROPERTY LABELS REQUIRES_DISPLAY)
--endif()
diff --git a/sci-libs/itk/itk-5.0.0.ebuild b/sci-libs/itk/itk-5.0.0.ebuild
deleted file mode 100644
index 1e3bb39..0000000
--- a/sci-libs/itk/itk-5.0.0.ebuild
+++ /dev/null
@@ -1,150 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 python3_{5,6,7} )
-
-inherit eutils toolchain-funcs cmake-utils python-single-r1
-
-MY_PN="InsightToolkit"
-MY_P="${MY_PN}-${PV}"
-
-DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
-HOMEPAGE="http://www.itk.org"
-SRC_URI="
- https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/${MY_P}.tar.gz
- test? ( https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/InsightData-${PV}.tar.gz )
- "
-RESTRICT="primaryuri"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="debug doc examples fftw python review test vtkglue"
-
-RDEPEND="
- dev-libs/double-conversion:0=
- media-libs/openjpeg:2
- media-libs/libpng:0=
- media-libs/tiff:0=
- sci-libs/dcmtk:0=
- sci-libs/hdf5:0=[cxx]
- sys-libs/zlib:0=
- virtual/jpeg:0=
- fftw? ( sci-libs/fftw:3.0= )
- vtkglue? ( sci-libs/vtk:0=[python?] )
-"
-DEPEND="${RDEPEND}
- python? (
- >=dev-lang/swig-2.0:0
- dev-cpp/castxml
- )
- doc? ( app-doc/doxygen )
-"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_pretend() {
- if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then
- elog "To tune ITK to make the best use of working memory you can set"
- elog " ITK_COMPUTER_MEMORY_SIZE=XX"
- elog "in make.conf, default is 1 (unit is GB)"
- fi
- if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then
- elog "For Python language bindings, you can define the dimensions"
- elog "you want to create bindings for by setting"
- elog " ITK_WRAP_DIMS=X;Y;Z..."
- elog "in make.conf, default is 2;3 for 2D and 3D data"
- fi
-}
-
-src_prepare() {
- sed -i -e "s/find_package(OpenJPEG 2.0.0/find_package(OpenJPEG/g"\
- Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt
- default
-}
-
-src_configure() {
- local mycmakeargs=(
- -DBUILD_SHARED_LIBS=ON
- -DITK_USE_SYSTEM_DCMTK=ON
- -DGDCM_USE_SYSTEM_OPENJPEG=ON
- -DITK_USE_SYSTEM_DOUBLECONVERSION=ON
- -DITK_USE_SYSTEM_CASTXML=ON
- -DITK_USE_SYSTEM_HDF5=ON
- -DITK_USE_SYSTEM_JPEG=ON
- -DITK_USE_SYSTEM_PNG=ON
- -DITK_USE_SYSTEM_SWIG=ON
- -DITK_USE_SYSTEM_TIFF=ON
- -DITK_USE_SYSTEM_ZLIB=ON
- -DITK_USE_KWSTYLE=OFF
- -DITK_BUILD_DEFAULT_MODULES=ON
- -DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}"
- -DWRAP_ITK_JAVA=OFF
- -DWRAP_ITK_TCL=OFF
- -Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion"
- -DExternalData_OBJECT_STORES="${WORKDIR}/InsightToolkit-${PV}/.ExternalData"
- -DBUILD_TESTING="$(usex test ON OFF)"
- -DBUILD_EXAMPLES="$(usex examples ON OFF)"
- -DITK_USE_REVIEW="$(usex review ON OFF)"
- -DITK_INSTALL_LIBRARY_DIR=$(get_libdir)
- )
- if use fftw; then
- mycmakeargs+=(
- -DUSE_FFTWD=ON
- -DUSE_FFTWF=ON
- -DUSE_SYSTEM_FFTW=ON
- -DITK_WRAP_double=ON
- -DITK_WRAP_vector_double=ON
- -DITK_WRAP_covariant_vector_double=ON
- -DITK_WRAP_complex_double=ON
- )
- fi
- if use vtkglue; then
- mycmakeargs+=(
- -DModule_ITKVtkGlue=ON
- )
- fi
- if use python; then
- mycmakeargs+=(
- -DITK_WRAP_PYTHON=ON
- -DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}"
- )
- else
- mycmakeargs+=(
- -DITK_WRAP_PYTHON=OFF
- )
- fi
- cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
-
- if use examples; then
- insinto /usr/share/doc/${PF}/examples
- docompress -x /usr/share/doc/${PF}/examples
- doins -r "${S}"/Examples/*
- fi
-
- echo "ITK_DATA_ROOT=${EROOT%/}/usr/share/${PN}/data" > ${T}/40${PN}
- local ldpath="${EROOT%/}/usr/$(get_libdir)/InsightToolkit"
- if use python; then
- echo "PYTHONPATH=${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN}
- ldpath="${ldpath}:${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
- fi
- echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
- doenvd "${T}"/40${PN}
-
- if use doc; then
- insinto /usr/share/doc/${PF}/api-docs
- cd "${WORKDIR}"/html
- rm *.md5 || die "Failed to remove superfluous hashes"
- einfo "Installing API docs. This may take some time."
- insinto /usr/share/doc/${PF}/api-docs
- doins -r *
- fi
-}
diff --git a/sci-libs/itk/itk-5.0.1.ebuild b/sci-libs/itk/itk-5.0.1.ebuild
deleted file mode 100644
index 4e06ea5..0000000
--- a/sci-libs/itk/itk-5.0.1.ebuild
+++ /dev/null
@@ -1,176 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 python3_{5,6,7} )
-
-inherit eutils toolchain-funcs cmake-utils python-single-r1
-
-MY_PN="InsightToolkit"
-MY_P="${MY_PN}-${PV}"
-GLI_HASH="187ab99b7d42718c99e5017f0acd3900d7469bd1"
-GLI_TEST_HASH="57b5d5de8d777f10f269445a"
-
-DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
-HOMEPAGE="http://www.itk.org"
-SRC_URI="
- https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/${MY_P}.tar.gz
- https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator/archive/${GLI_HASH}.zip -> ITKGenericLabelInterpolator-${PV}.zip
- test? (
- https://data.kitware.com/api/v1/folder/${GLI_TEST_HASH}/download -> ITKGenericLabelInterpolator_test-${PV}.zip
- https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/InsightData-${PV}.tar.gz
- )
- "
-RESTRICT="primaryuri"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="debug doc examples fftw python review test vtkglue"
-# python will not work, this is a know issue upstream:
-# https://github.com/InsightSoftwareConsortium/ITK/issues/1229
-# https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator/issues/10
-
-RDEPEND="
- dev-libs/double-conversion:0=
- media-libs/openjpeg:2
- media-libs/libpng:0=
- media-libs/tiff:0=
- sci-libs/dcmtk:0=
- sci-libs/hdf5:0=[cxx]
- sys-libs/zlib:0=
- virtual/jpeg:0=
- fftw? ( sci-libs/fftw:3.0= )
- vtkglue? ( sci-libs/vtk:0=[rendering,python?] )
-"
-DEPEND="${RDEPEND}
- sys-apps/coreutils
- python? (
- >=dev-lang/swig-2.0:0
- dev-cpp/castxml
- )
- doc? ( app-doc/doxygen )
-"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-S="${WORKDIR}/${MY_P}"
-
-PATCHES=(
- "${FILESDIR}"/ITKModuleRemote.patch
- "${FILESDIR}"/tests.patch
-)
-
-pkg_pretend() {
- if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then
- elog "To tune ITK to make the best use of working memory you can set"
- elog " ITK_COMPUTER_MEMORY_SIZE=XX"
- elog "in make.conf, default is 1 (unit is GB)"
- fi
- if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then
- elog "For Python language bindings, you can define the dimensions"
- elog "you want to create bindings for by setting"
- elog " ITK_WRAP_DIMS=X;Y;Z..."
- elog "in make.conf, default is 2;3 for 2D and 3D data"
- fi
-}
-
-src_prepare() {
- sed -i -e "s/find_package(OpenJPEG 2.0.0/find_package(OpenJPEG/g"\
- Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt
- default
- ln -sr ../ITKGenericLabelInterpolator-* Modules/Remote/ITKGenericLabelInterpolator || die
- if use test; then
- for filename in ../GenericLabelInterpolator/test/*/*mha; do
- MD5=$(md5sum $filename) || die
- MD5=${MD5% *} || die
- cp "$filename" ".ExternalData/MD5/${MD5}" || die
- done
- fi
-}
-
-src_configure() {
- local mycmakeargs=(
- -DBUILD_SHARED_LIBS=ON
- -DGDCM_USE_SYSTEM_OPENJPEG=ON
- -DITK_FORBID_DOWNLOADS:BOOL=OFF
- -DITK_USE_SYSTEM_DCMTK=ON
- -DITK_USE_SYSTEM_DOUBLECONVERSION=ON
- -DITK_USE_SYSTEM_CASTXML=ON
- -DITK_USE_SYSTEM_HDF5=ON
- -DITK_USE_SYSTEM_JPEG=ON
- -DITK_USE_SYSTEM_PNG=ON
- -DITK_USE_SYSTEM_SWIG=ON
- -DITK_USE_SYSTEM_TIFF=ON
- -DITK_USE_SYSTEM_ZLIB=ON
- -DITK_USE_KWSTYLE=OFF
- -DITK_BUILD_DEFAULT_MODULES=ON
- -DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}"
- -DWRAP_ITK_JAVA=OFF
- -DWRAP_ITK_TCL=OFF
- -Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion"
- -DExternalData_OBJECT_STORES="${WORKDIR}/InsightToolkit-${PV}/.ExternalData"
- -DModule_GenericLabelInterpolator:BOOL=ON
- -DModule_ITKReview:BOOL=ON
- -DBUILD_TESTING="$(usex test ON OFF)"
- -DBUILD_EXAMPLES="$(usex examples ON OFF)"
- -DITK_USE_REVIEW="$(usex review ON OFF)"
- -DITK_INSTALL_LIBRARY_DIR=$(get_libdir)
- )
- if use fftw; then
- mycmakeargs+=(
- -DUSE_FFTWD=ON
- -DUSE_FFTWF=ON
- -DUSE_SYSTEM_FFTW=ON
- -DITK_WRAP_double=ON
- -DITK_WRAP_vector_double=ON
- -DITK_WRAP_covariant_vector_double=ON
- -DITK_WRAP_complex_double=ON
- )
- fi
- if use vtkglue; then
- mycmakeargs+=(
- -DModule_ITKVtkGlue=ON
- )
- fi
- if use python; then
- mycmakeargs+=(
- -DITK_WRAP_PYTHON=ON
- -DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}"
- )
- else
- mycmakeargs+=(
- -DITK_WRAP_PYTHON=OFF
- )
- fi
- cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
-
- if use examples; then
- insinto /usr/share/doc/${PF}/examples
- docompress -x /usr/share/doc/${PF}/examples
- doins -r "${S}"/Examples/*
- fi
-
- echo "ITK_DATA_ROOT=${EROOT%/}/usr/share/${PN}/data" > ${T}/40${PN}
- local ldpath="${EROOT%/}/usr/$(get_libdir)/InsightToolkit"
- if use python; then
- echo "PYTHONPATH=${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN}
- ldpath="${ldpath}:${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
- fi
- echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
- doenvd "${T}"/40${PN}
-
- if use doc; then
- insinto /usr/share/doc/${PF}/api-docs
- cd "${WORKDIR}"/html
- rm *.md5 || die "Failed to remove superfluous hashes"
- einfo "Installing API docs. This may take some time."
- insinto /usr/share/doc/${PF}/api-docs
- doins -r *
- fi
-}
diff --git a/sci-libs/itk/itk-5.0_rc1.ebuild b/sci-libs/itk/itk-5.0_rc1.ebuild
deleted file mode 100644
index 5e34751..0000000
--- a/sci-libs/itk/itk-5.0_rc1.ebuild
+++ /dev/null
@@ -1,149 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 python3_{5,6,7} )
-
-inherit eutils toolchain-funcs cmake-utils python-single-r1
-
-MY_PV="5.0rc01"
-
-DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
-HOMEPAGE="http://www.itk.org"
-SRC_URI="
- https://github.com/InsightSoftwareConsortium/ITK/archive/v${MY_PV}.tar.gz
- test? ( https://github.com/InsightSoftwareConsortium/ITK/releases/download/v5.0rc01/InsightData-${MY_PV}.tar.gz )
- "
-RESTRICT="primaryuri"
-
-LICENSE="Apache-2.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="debug doc examples fftw python review test vtkglue"
-
-RDEPEND="
- dev-libs/double-conversion:0=
- media-libs/openjpeg:2
- media-libs/libpng:0=
- media-libs/tiff:0=
- sci-libs/dcmtk:0=
- sci-libs/hdf5:0=[cxx]
- sys-libs/zlib:0=
- virtual/jpeg:0=
- fftw? ( sci-libs/fftw:3.0= )
- vtkglue? ( sci-libs/vtk:0=[python?] )
-"
-DEPEND="${RDEPEND}
- python? (
- >=dev-lang/swig-2.0:0
- dev-cpp/castxml
- )
- doc? ( app-doc/doxygen )
-"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-S="${WORKDIR}/ITK-${MY_PV}"
-
-pkg_pretend() {
- if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then
- elog "To tune ITK to make the best use of working memory you can set"
- elog " ITK_COMPUTER_MEMORY_SIZE=XX"
- elog "in make.conf, default is 1 (unit is GB)"
- fi
- if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then
- elog "For Python language bindings, you can define the dimensions"
- elog "you want to create bindings for by setting"
- elog " ITK_WRAP_DIMS=X;Y;Z..."
- elog "in make.conf, default is 2;3 for 2D and 3D data"
- fi
-}
-
-src_prepare() {
- sed -i -e "s/find_package(OpenJPEG 2.0.0/find_package(OpenJPEG/g"\
- Modules/ThirdParty/GDCM/src/gdcm/CMakeLists.txt
- default
-}
-
-src_configure() {
- local mycmakeargs=(
- -DBUILD_SHARED_LIBS=ON
- -DITK_USE_SYSTEM_DCMTK=ON
- -DGDCM_USE_SYSTEM_OPENJPEG=ON
- -DITK_USE_SYSTEM_DOUBLECONVERSION=ON
- -DITK_USE_SYSTEM_CASTXML=ON
- -DITK_USE_SYSTEM_HDF5=ON
- -DITK_USE_SYSTEM_JPEG=ON
- -DITK_USE_SYSTEM_PNG=ON
- -DITK_USE_SYSTEM_SWIG=ON
- -DITK_USE_SYSTEM_TIFF=ON
- -DITK_USE_SYSTEM_ZLIB=ON
- -DITK_USE_KWSTYLE=OFF
- -DITK_BUILD_DEFAULT_MODULES=ON
- -DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}"
- -DWRAP_ITK_JAVA=OFF
- -DWRAP_ITK_TCL=OFF
- -Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion"
- -DExternalData_OBJECT_STORES="${WORKDIR}/InsightToolkit-${MY_PV}/.ExternalData"
- -DBUILD_TESTING="$(usex test ON OFF)"
- -DBUILD_EXAMPLES="$(usex examples ON OFF)"
- -DITK_USE_REVIEW="$(usex review ON OFF)"
- -DITK_INSTALL_LIBRARY_DIR=$(get_libdir)
- )
- if use fftw; then
- mycmakeargs+=(
- -DUSE_FFTWD=ON
- -DUSE_FFTWF=ON
- -DUSE_SYSTEM_FFTW=ON
- -DITK_WRAP_double=ON
- -DITK_WRAP_vector_double=ON
- -DITK_WRAP_covariant_vector_double=ON
- -DITK_WRAP_complex_double=ON
- )
- fi
- if use vtkglue; then
- mycmakeargs+=(
- -DModule_ITKVtkGlue=ON
- )
- fi
- if use python; then
- mycmakeargs+=(
- -DITK_WRAP_PYTHON=ON
- -DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}"
- )
- else
- mycmakeargs+=(
- -DITK_WRAP_PYTHON=OFF
- )
- fi
- cmake-utils_src_configure
-}
-
-src_install() {
- cmake-utils_src_install
-
- if use examples; then
- insinto /usr/share/doc/${PF}/examples
- docompress -x /usr/share/doc/${PF}/examples
- doins -r "${S}"/Examples/*
- fi
-
- echo "ITK_DATA_ROOT=${EROOT%/}/usr/share/${PN}/data" > ${T}/40${PN}
- local ldpath="${EROOT%/}/usr/$(get_libdir)/InsightToolkit"
- if use python; then
- echo "PYTHONPATH=${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN}
- ldpath="${ldpath}:${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
- fi
- echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
- doenvd "${T}"/40${PN}
-
- if use doc; then
- insinto /usr/share/doc/${PF}/api-docs
- cd "${WORKDIR}"/html
- rm *.md5 || die "Failed to remove superfluous hashes"
- einfo "Installing API docs. This may take some time."
- insinto /usr/share/doc/${PF}/api-docs
- doins -r *
- fi
-}
diff --git a/sci-libs/itk/metadata.xml b/sci-libs/itk/metadata.xml
deleted file mode 100644
index 7c45353..0000000
--- a/sci-libs/itk/metadata.xml
+++ /dev/null
@@ -1,23 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>maintainer-wanted@gentoo.org</email>
- </maintainer>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
- <longdescription lang="en">
-Insight Segmentation and Registration Toolkit (ITK) is a library
-that provides developers with an extensive suite of tools for image
-analysis.
-</longdescription>
- <use>
- <flag name="review">Enable compilation of methods under review</flag>
- <flag name="vtkglue">PLEASE FIX MY DESCRIPTION</flag>
- </use>
- <upstream>
- <remote-id type="sourceforge">itk</remote-id>
- </upstream>
-</pkgmetadata>