From 5eeb0c86d5b27fea3c037c2cbafd41c76b9c21b0 Mon Sep 17 00:00:00 2001
From: setina42 <tina.seg@bluewin.ch>
Date: Fri, 14 Dec 2018 12:53:14 +0000
Subject: [PATCH] live ebuild for setina42/nilearn

---
 sci-biology/nilearn/Manifest            |  1 +
 sci-biology/nilearn/nilearn-9999.ebuild | 57 +++++++++++++++++++++++++
 2 files changed, 58 insertions(+)
 create mode 100644 sci-biology/nilearn/Manifest
 create mode 100644 sci-biology/nilearn/nilearn-9999.ebuild

diff --git a/sci-biology/nilearn/Manifest b/sci-biology/nilearn/Manifest
new file mode 100644
index 0000000..983a02d
--- /dev/null
+++ b/sci-biology/nilearn/Manifest
@@ -0,0 +1 @@
+EBUILD nilearn-9999.ebuild 1451 BLAKE2B 61bef86963cb972874a017a65997c71b7c7f48ac7d80d20dd33dbdbda41a7b1ca201b69312e5284d7887149acd5189b3e57cc33529ab905f14db220388952c9c SHA512 f09fa808a199e2698a52c18fc4ca2a1a2d5c84f8067db817f555963a64195be8212a5562dbd7d3d6364f9873eafbd63a262737997b6021a7144679a7a9b13b75
diff --git a/sci-biology/nilearn/nilearn-9999.ebuild b/sci-biology/nilearn/nilearn-9999.ebuild
new file mode 100644
index 0000000..37f4ff1
--- /dev/null
+++ b/sci-biology/nilearn/nilearn-9999.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+
+inherit distutils-r1 git-r3
+
+DESCRIPTION="Fast and easy statistical learning on NeuroImaging data"
+HOMEPAGE="http://nilearn.github.io/"
+SRC_URI=""
+EGIT_REPO_URI="https://github.com/setina42/nilearn"
+EGIT_BRANCH="TiledSlicer"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS=""
+IUSE="+plot test"
+
+DEPEND="
+	test? (
+		${RDEPEND}
+		dev-python/nose[${PYTHON_USEDEP}]
+		)
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	"
+RDEPEND="
+	dev-python/joblib[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	sci-libs/scikits_learn[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	sci-libs/nibabel[${PYTHON_USEDEP}]
+	plot? ( dev-python/matplotlib[${PYTHON_USEDEP}] )"
+
+# (Temporarily) commented out, since Gentoo sci-libs/scikits_learn decided it
+# is a mess to maintain system joblib usage
+#PATCHES=( "${FILESDIR}/0.4.1-bundled_joblib_test.patch" )
+
+python_prepare_all() {
+	# upstream is reluctant to *not* depend on bundled scikits_learn:
+	# https://github.com/nilearn/nilearn/pull/1398
+	#local f
+	#for f in nilearn/{*/*/,*/,}*.py; do
+	#	sed -r \
+	#		-e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \
+	#		-e 's/from (sklearn|\.|)\.externals import/import/' \
+	#	-i $f || die
+	#done
+
+	distutils-r1_python_prepare_all
+}
+
+python_test() {
+	echo "backend: Agg" > matplotlibrc
+	MPLCONFIGDIR=. nosetests -v || die
+}