From 5b49d4877d2dd1d18dad5e69d48a156e6bf75985 Mon Sep 17 00:00:00 2001
From: Horea Christian <chr@chymera.eu>
Date: Fri, 12 Jan 2024 15:37:58 -0500
Subject: [PATCH] Added patch to parameterzie whirlgif install

---
 sci-biology/afni/afni-9999.ebuild          | 12 +++++--
 sci-biology/afni/files/afni-whirlgif.patch | 39 ++++++++++++++++++++++
 2 files changed, 48 insertions(+), 3 deletions(-)
 create mode 100644 sci-biology/afni/files/afni-whirlgif.patch

diff --git a/sci-biology/afni/afni-9999.ebuild b/sci-biology/afni/afni-9999.ebuild
index 91ddcfe..a21e5b0 100644
--- a/sci-biology/afni/afni-9999.ebuild
+++ b/sci-biology/afni/afni-9999.ebuild
@@ -29,7 +29,7 @@ EGIT_BRANCH="packaging"
 SLOT="0"
 LICENSE="GPL-3+"
 KEYWORDS=""
-IUSE="test"
+IUSE="test whirlgif"
 RESTRICT="!test? ( test )"
 
 RDEPEND="
@@ -74,6 +74,11 @@ src_prepare() {
 
 src_configure() {
 	#LDFLAGS="-L${S}/${LIBDIR} ${LDFLAGS}" econf --enable-progpath="${EPREFIX}/usr/bin"
+	if use !whirlgif; then
+		#sed -i /whirlgif/d  src/CMakeLists_binaries.txt
+		#cat src/CMakeLists_binaries.txt
+		eapply "${FILESDIR}/${PN}-whirlgif.patch"
+	fi
 	export CFLAGS="-pthread ${CFLAGS}"
 	export GIT_REPO_VERSION=3.0.1.1
 	#export LDFLAGS="-lpthread ${LDFLAGS}"
@@ -126,9 +131,10 @@ src_install() {
 	#addpredict /usr/bin/whirlgif
 	#addpredict /usr/bin/mpeg_encode
 	#exit
-	rm targets_built/whirlgif
-	rm targets_built/mpeg_encode
 	DESTDIR=${D} eninja install
+	cd ${D}
+	#rm usr/bin/whirlgif
+	rm usr/bin/mpeg_encode
 	# This is old example ants stuff.
 	#BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
 	#cmake_src_install
diff --git a/sci-biology/afni/files/afni-whirlgif.patch b/sci-biology/afni/files/afni-whirlgif.patch
new file mode 100644
index 0000000..a357799
--- /dev/null
+++ b/sci-biology/afni/files/afni-whirlgif.patch
@@ -0,0 +1,39 @@
+diff --git a/packaging/installation_components.txt b/packaging/installation_components.txt
+index 127193338..ba8825a7b 100644
+--- a/packaging/installation_components.txt
++++ b/packaging/installation_components.txt
+@@ -347,7 +347,6 @@ uniq_images, corebinaries
+ unu, corebinaries
+ waver, corebinaries
+ whereami, corebinaries
+-whirlgif, corebinaries
+ 3dMax, tcsh
+ 3dPAR2AFNI.pl, tcsh
+ @1dDiffMag, tcsh
+diff --git a/src/CMakeLists_binaries.txt b/src/CMakeLists_binaries.txt
+index d53368390..8c8e9e1fb 100644
+--- a/src/CMakeLists_binaries.txt
++++ b/src/CMakeLists_binaries.txt
+@@ -209,7 +209,6 @@ foreach(
+   uniq_images
+   unu
+   whereami
+-  whirlgif
+ )
+
+   add_afni_executable(${target} ${target}.c)
+diff --git a/src/Makefile.INCLUDE b/src/Makefile.INCLUDE
+index f44103def..7ac08a87d 100644
+--- a/src/Makefile.INCLUDE
++++ b/src/Makefile.INCLUDE
+@@ -3495,11 +3495,6 @@ help_format:help_format.o
+ ibinom:ibinom.o
+ 	$(CC) -o ibinom ibinom.o $(LFLAGS) $(LLIBS)
+
+-## GIF animation
+-
+-whirlgif:whirlgif.h whirlgif.c
+-	$(CC) -o whirlgif whirlgif.c $(INFLAGS) $(LFLAGS) $(LLIBS)
+-
+ extor.o:extor.c
+ 	$(CCFAST) -c extor.c $(INFLAGS)