From 56f20b0fdea2227593e7c9b32faa6ecd60559e72 Mon Sep 17 00:00:00 2001
From: Horea Christian <chr@chymera.eu>
Date: Fri, 20 Sep 2019 02:36:59 +0200
Subject: [PATCH] Updated to use ITK

---
 sci-biology/ants/Manifest         |  1 +
 sci-biology/ants/ants-9999.ebuild | 35 ++++++++++++++++++++++++++-----
 2 files changed, 31 insertions(+), 5 deletions(-)

diff --git a/sci-biology/ants/Manifest b/sci-biology/ants/Manifest
index a689309..1b35e2b 100644
--- a/sci-biology/ants/Manifest
+++ b/sci-biology/ants/Manifest
@@ -1 +1,2 @@
 DIST ants-2.3.1.tar.gz 2437950 SHA256 c0680feab0ebb85c8cd6685043126666929b35e1cf387a5cc1d3a2d7169bddd3 SHA512 c22af10b7aed1dc5c6b06d6b7d3b2c33ced382926ab5972dd55e4766ff0269330bf01e6975712d991e96c5d9d23f78c8081a3ff475ea92d539c695105b5cfe9a WHIRLPOOL 54c0f411bbd305530c9a8fcdfc66e42f76991c209330375e11d65522ad7a2d58066fc349aae68d003aaab413b59bdabf2f9f5cdfd5626269caa9968909785964
+DIST rest?method=midas.bitstream.download&checksum=84cf0e06646142e0aa4c3d3324a62701 46161 SHA256 6c40c155a97d383438bc8a66eeb96df51517502bab0b1e8670711c141e71f689 SHA512 20942c444831f9dd71d41809acf0eac6fb351bda9a6e2d6826a645121b09d781a7feacdcd5edf4b7e9708f9e5de380bdfdfcb9f7c4b25fa1a03d506d817c3e1d WHIRLPOOL 5c772213fe6ad3c7a032a61024188a1eaeed93137967e2996cd3ceaf39538e9a522b5e8cdf8826816ba2727191bed510b7616056ab32e95d13bcdef0ef12ced9
diff --git a/sci-biology/ants/ants-9999.ebuild b/sci-biology/ants/ants-9999.ebuild
index 885d1c3..615d252 100644
--- a/sci-biology/ants/ants-9999.ebuild
+++ b/sci-biology/ants/ants-9999.ebuild
@@ -1,26 +1,51 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2019 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
 inherit cmake-utils git-r3 multilib
 
+MY_HASH="84cf0e06646142e0aa4c3d3324a62701"
+
 DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
 HOMEPAGE="http://stnava.github.io/ANTs/"
-SRC_URI=""
+SRC_URI="http://slicer.kitware.com/midas3/api/rest?method=midas.bitstream.download&checksum=${MY_HASH} > ${MY_HASH}"
 EGIT_REPO_URI="https://github.com/stnava/ANTs.git"
+EGIT_COMMIT="1d2e5bf497cd71667d6f7d79ff858387c08bb93e"
 
 SLOT="0"
 LICENSE="BSD"
 KEYWORDS=""
+IUSE="test"
 
 DEPEND=">=dev-util/cmake-3.10.3"
-RDEPEND=""
+RDEPEND="
+	sci-libs/vtk
+	>=sci-libs/itk-5.0_rc1
+	"
+
+#S="${WORKDIR}/ANTs-${PV}"
+
+src_prepare() {
+	pwd
+	ln -s
+	die
+}
+
+src_configure() {
+	local mycmakeargs=(
+		-DITK_DIR="/usr/include/ITK-5.0/"
+		-DUSE_SYSTEM_ITK=ON
+		-DUSE_SYSTEM_VTK=ON
+		-DBUILD_TESTING="$(usex test ON OFF)"
+	)
+	cmake-utils_src_configure
+}
 
 src_install() {
 	cd "${WORKDIR}/${P}_build/ANTS-build" || die "build dir not found"
 	default
-	cd "${WORKDIR}/ANTs-${PV}/Scripts" || die "scripts dir not found"
+	cd "${WORKDIR}/${P}/Scripts" || die "scripts dir not found"
 	dobin *.sh
 	dodir /usr/$(get_libdir)/ants
 	install -t "${D}"usr/$(get_libdir)/ants *