gentoo-related/TheChymera-overlay
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Merge branch 'master' of github.com:TheChymera/overlay

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Horea Christian 2020-12-10 03:24:53 -05:00
commit 4b2e9460ee
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14
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
<email>klugh@ethz.ch</email>
<name>Hendrik Klug</name>
</maintainer>
<longdescription>
Get notified via a telegram bot when your bash command finished.
</longdescription>
<upstream>
<remote-id type="github">Jimmy2027/NORBY</remote-id>
</upstream>
</pkgmetadata>

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dev-python/norby/norby-9999.ebuild Normal file
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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_{7..9} )
inherit distutils-r1
inherit git-r3
DESCRIPTION="Get notified via a telegram bot when your bash command finished."
HOMEPAGE="https://github.com/Jimmy2027/NORBY"
#SRC_URI="https://github.com/Jimmy2027/NORBY/archive/${PV}.tar.gz -> ${P}.tar.gz"
EGIT_REPO_URI="https://github.com/Jimmy2027/NORBY.git"
KEYWORDS="~amd64 ~x86"
LICENSE="GNU General Public License v3.0"
SLOT="0"
DEPEND="
dev-python/requests
"
RDEPEND="${DEPEND}"
src_unpack() {
git-r3_src_unpack
}
python_install_all() {
distutils-r1_python_install_all
}

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sci-biology/rat-brain-atlases/Manifest Normal file
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DIST rat-brain-atlases-0.1.tar.xz 4784449120 SHA256 8bf10b2737ebacf2658b09a97a76455775e1b86aedaa2bef3fd538e960fc5310 SHA512 0fbd4991bbf8767029ca0aac456b48926b6e02f6d1a35ba462502ec41242ed9bc1c1827ad28e32518d024c84d71baca54148f38420980a4da2193de92e29aaf0 WHIRLPOOL cdba1192810adf1d34c93f0084fc99abc83a6ee9a0b5cf641da3b108759af4ffafeefa49e25e5635be4d54630813b7cf1ed7c4ade0fc347c2416ac572db8d734

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sci-biology/rat-brain-atlases/metadata.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
<email>horea.christ@gmail.com</email>
<name>Horea Christian</name>
</maintainer>
<maintainer type="project">
<email>sci@gentoo.org</email>
<name>Gentoo Science Project</name>
</maintainer>
<longdescription lang="en">
Digital rat brain atlases in NIfTI format for use in magnetic
resonance rat brain imaging.
</longdescription>
</pkgmetadata>

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sci-biology/rat-brain-atlases/rat-brain-atlases-0.1.ebuild Normal file
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# Copyright 2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
DESCRIPTION="A collection of rat brain atlases in NIfTI format"
HOMEPAGE="https://github.com/IBT-FMI/rat-brain-atlases"
SRC_URI="http://chymera.eu/distfiles/${P}.tar.xz"
LICENSE="fairuse"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
pkg_pretend() {
CHECKREQS_DISK_BUILD="42G"
check-reqs_pkg_pretend
}
# We disable this phase to not check requirements twice.
pkg_setup() { :; }
src_install() {
insinto "/usr/share/${PN}"
doins *
}

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sci-libs/torchio/Manifest Normal file
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DIST torchio-0.17.42.tar.gz 23194366 SHA256 afc1a26c61cdaabd34bc44992a0afa72c2130a1d8aa509bdbe7326c4e6546caa SHA512 c6a2696a2b76d3699eb47f77ce490f0aff4aea93bf4d6e64a2bf96801d098f9e898a7f6dd657581aadb3f7edb46f40c1676a31c2c6ded14a38f9457536c07d1e WHIRLPOOL 47733cc96b417a0b2c401a6b98600955a8ff003edc42e50cf328151631a74decac3a3a8dfcdc30be3d6a687b9240a5b9fe8d8e18c8f4a1b3c743918d0627f6b7

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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
<email>klugh@ethz.ch</email>
<name>Hendrik Klug</name>
</maintainer>
<longdescription>
TorchIO is a Python package containing a set of tools to efficiently read,
preprocess, sample, augment, and write 3D medical images in deep learning
applications written in PyTorch, including intensity and spatial transforms
for data augmentation and preprocessing. Transforms include typical computer
vision operations such as random affine transformations and also
domain-specific ones such as simulation of intensity artifacts due to MRI
magnetic field inhomogeneity or k-space motion artifacts.
</longdescription>
<upstream>
<remote-id type="github">fepegar/torchio</remote-id>
</upstream>
</pkgmetadata>

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# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_{6,7,8} )
DISTUTILS_SINGLE_IMPL=1
DISTUTILS_USE_SETUPTOOLS=rdepend
inherit distutils-r1
DESCRIPTION="A set of tools to efficiently read, preprocess, sample, augment, and write 3D medical images in deep learning applications."
HOMEPAGE="https://torchio.readthedocs.io/"
SRC_URI="https://github.com/fepegar/torchio/archive/v${PV}.tar.gz -> ${P}.tar.gz"
KEYWORDS="~amd64 ~x86"
LICENSE="MIT license"
SLOT="0"
IUSE=""
REQUIRED_USE="${PYTHON_REQUIRED_USE}"
DEPEND="
$(python_gen_cond_dep '
dev-python/click[${PYTHON_USEDEP}]
dev-python/humanize[${PYTHON_USEDEP}]
sci-libs/nibabel[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/deprecation[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
>=sci-libs/pytorch-1.1[${PYTHON_USEDEP}]
dev-python/tqdm[${PYTHON_USEDEP}]
')
sci-libs/simpleitk[${PYTHON_SINGLE_USEDEP}]
"
RDEPEND="${DEPEND}"
distutils_enable_tests pytest