sci-biology/afni: new ebuild for CMake install
Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Horea Christian <chr@chymera.eu>
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Horea Christian
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*afni-9999 (09 Jan 2021)
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09 Jan 2021; <chymera@gentoo.org> +afni-9999.ebuild, +metadata.xml:
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sci-biology/afni: new ebuild for CMake install
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DIST 5eae81ba1e87ef3553df3b6ba585f12dc81a0030.tar.gz 107702 SHA256 a89e657385cfc5c7631bf34d21282f3720bf243337c99d42db99332f408f4fcd SHA512 c87712c0f334e025d29d1372ddbd7299b8d5378f7ef7dc09941a10f2f9c75ad9350fe8ceb6e0f6197a5f1c27ab79e03fdfb28a97582e860c6e667b29e9b75459 WHIRLPOOL ad303ee73431054ac97f49a544280bbc847f62b0e8b9fb9d0702197fa80856fd560b03606988ef3a875e43f0a56d92b55f8fbcc333079273266900443d1b768f
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DIST 65f801b9c2f1f15f4de4a19d45e6595c25765632.tar.gz 435886 SHA256 80cbfdfb24f8848de652a062be4f5c271d7858d643af4a939b6815306194144b SHA512 be03cdc6cf17fd9ff74c5ecc1f6b2132121bb4b7973a731da334af2a8428d1f0dbbf7b94b2511d1ff7e515b8cc4cf3316d62b189566fb6ffc88c6146eebd48ff WHIRLPOOL 4a3d8154ffa0500c27af2a4ccb60d0eb79ee661918023bd3dee223272e7aee1d360637f99e31414ffac105291fbc80d1f1a4b0c42b2d9fcf4a3c2c976d1ce37e
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DIST 962155a01f5a1b87bd64e3e3d880b4dbc2347ac7.tar.gz 881944 SHA256 6aa544799dafaa07c976d137088828262957e0ff5bd2bc6b856ba771c8944299 SHA512 47c1888758020bcf881e7a4933eec1716118c671ac1a9bb4f4637a9634f7fd5c3b5bfa4da7fa001c2bc6abd0f2469583c1275c398836b5c77cb870507c8e7df2 WHIRLPOOL a076721deb6cf206e05df37d10acdef2522be51b1889557319e60ccf8d0b89ba2030ec7f9297bd218c651d2875c661eec1f672d944cca8f3c46989b761201210
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# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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#CMAKE_MAKEFILE_GENERATOR="emake"
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PYTHON_COMPAT=( python3_{6..8} )
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inherit cmake distutils-r1 git-r3 multilib
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GTS_HASH="962155a01f5a1b87bd64e3e3d880b4dbc2347ac7"
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NIFTI_HASH="65f801b9c2f1f15f4de4a19d45e6595c25765632"
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GIFTI_HASH="5eae81ba1e87ef3553df3b6ba585f12dc81a0030"
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DESCRIPTION="Advanced Normalitazion Tools for neuroimaging"
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HOMEPAGE="http://stnava.github.io/ANTs/"
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SRC_URI="
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https://github.com/leej3/gts/archive/${GTS_HASH}.tar.gz
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https://github.com/NIFTI-Imaging/nifti_clib/archive/${NIFTI_HASH}.tar.gz
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https://github.com/NIFTI-Imaging/gifti_clib/archive/${GIFTI_HASH}.tar.gz
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"
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EGIT_REPO_URI="https://github.com/afni/afni.git"
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SLOT="0"
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LICENSE="GPL-3+"
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KEYWORDS="~amd64 ~x86"
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IUSE="test"
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RESTRICT="!test? ( test )"
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RDEPEND="
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dev-libs/glib:2
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dev-libs/libf2c
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dev-libs/expat
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dev-util/ninja
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media-libs/freeglut
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media-libs/glu
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media-libs/netpbm
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media-libs/qhull
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media-video/mpeg-tools
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sci-libs/gsl
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sys-devel/llvm:*
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sys-libs/libomp
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dev-libs/libpthread-stubs
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virtual/jpeg-compat:62
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x11-libs/libGLw
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x11-libs/libXft
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x11-libs/libXi
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x11-libs/libXmu
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x11-libs/libXpm
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x11-libs/libXt
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x11-libs/motif[-static-libs]
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"
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DEPEND="
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${RDEPEND}
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app-shells/tcsh
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"
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# Prospectively:
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#sci-libs/gts
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#Update jpeg-compat to virtual/jpeg:0
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# look for xmhtlm
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src_prepare() {
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tar xf "${DISTDIR}/${GTS_HASH}.tar.gz" || die
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tar xf "${DISTDIR}/${NIFTI_HASH}.tar.gz" || die
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tar xf "${DISTDIR}/${GIFTI_HASH}.tar.gz" || die
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cmake_src_prepare
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default
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}
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src_configure() {
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#LDFLAGS="-L${S}/${LIBDIR} ${LDFLAGS}" econf --enable-progpath="${EPREFIX}/usr/bin"
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export CFLAGS="-pthread ${CFLAGS}"
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#export LDFLAGS="-lpthread ${LDFLAGS}"
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#-CC="$(tc-getCC)"
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local mycmakeargs=(
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-GNinja
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-DCOMP_BINARIES=ON
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-DUSE_SYSTEM_NIFTI=OFF
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-DUSE_SYSTEM_GIFTI=OFF
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-DUSE_SYSTEM_XMHTML=OFF
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-DUSE_SYSTEM_GTS=OFF
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-DFETCHCONTENT_SOURCE_DIR_GTS="${WORKDIR}/${P}/gts-${GTS_HASH}"
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-DFETCHCONTENT_SOURCE_DIR_NIFTI_CLIB="${WORKDIR}/${P}/nifti_clib-${NIFTI_HASH}"
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-DFETCHCONTENT_SOURCE_DIR_GIFTI_CLIB="${WORKDIR}/${P}/gifti_clib-${GIFTI_HASH}"
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-DCOMP_GUI=ON
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-DCOMP_PLUGINS=ON
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-DUSE_OMP=ON
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-DCOMP_PYTHON=OFF
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)
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tc-export CC
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cmake_src_configure
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}
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#/work/afni-9999/nifti_clib-65f801b9c2f1f15f4de4a19d45e6595c25765632
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#src_install() {
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# BUILD_DIR="${WORKDIR}/${P}_build/ANTS-build"
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# cmake_src_install
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# cd "${S}/Scripts" || die "scripts dir not found"
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# dobin *.sh
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# dodir /usr/$(get_libdir)/ants
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# insinto "/usr/$(get_libdir)/ants"
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# doins *
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# doenvd "${FILESDIR}"/99ants
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#}
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
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<pkgmetadata>
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<maintainer type="person">
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<email>gentoo@chymera.eu</email>
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<name>Horea Christian</name>
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</maintainer>
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<maintainer type="project">
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<email>sci@gentoo.org</email>
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<name>Gentoo Science Project</name>
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</maintainer>
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<longdescription>
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Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying
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functional MRI data—a technique for mapping human brain activity.
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</longdescription>
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</pkgmetadata>
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