From 2c435e4a442b1c8e7f9d6b80d2f7fa74f44592e1 Mon Sep 17 00:00:00 2001
From: Horea Christian <chr@chymera.eu>
Date: Tue, 26 Mar 2019 22:14:10 +0100
Subject: [PATCH] Version bump 0.6.5 ahead of Gentoo Science

---
 sci-libs/pybids/Manifest            |  1 +
 sci-libs/pybids/metadata.xml        | 20 +++++++++++++
 sci-libs/pybids/pybids-0.6.5.ebuild | 44 +++++++++++++++++++++++++++++
 3 files changed, 65 insertions(+)
 create mode 100644 sci-libs/pybids/Manifest
 create mode 100644 sci-libs/pybids/metadata.xml
 create mode 100644 sci-libs/pybids/pybids-0.6.5.ebuild

diff --git a/sci-libs/pybids/Manifest b/sci-libs/pybids/Manifest
new file mode 100644
index 0000000..e598d71
--- /dev/null
+++ b/sci-libs/pybids/Manifest
@@ -0,0 +1 @@
+DIST pybids-0.6.5.tar.gz 2915557 SHA256 06fab79c0f2db87a6a9527a3b0043cbd3cf6961e95f9307a763593d89fad36c1 SHA512 9eef42f00440dddf0147d91f90e07db81f9f95a650f0e47c04304771173ca8691cdb366bd0df1d752c0444f102a4aa010c2343ba75df96528cceb9a98f9d8a0e WHIRLPOOL 8a0cecd8fcdfc1c03038f1d1c9b753ff7dc80ea05c695b0b3f579716ec95b402a42b0628eeb2a9dc430a4b5ee41508b212f054a64d521ea0455bfe30f64fff9c
diff --git a/sci-libs/pybids/metadata.xml b/sci-libs/pybids/metadata.xml
new file mode 100644
index 0000000..143b3ea
--- /dev/null
+++ b/sci-libs/pybids/metadata.xml
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>horea.christ@gmail.com</email>
+		<name>Horea Christian</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci@gentoo.org</email>
+		<name>Gentoo Science Project</name>
+	</maintainer>
+	<longdescription lang="en">
+		PyBIDS is a Python library to centralize interactions with datasets
+		conforming BIDS (Brain Imaging Data Structure) format. For more
+		information about BIDS visit http://bids.neuroimaging.io.
+	</longdescription>
+	<upstream>
+		<remote-id type="github">INCF/pybids</remote-id>
+	</upstream>
+</pkgmetadata>
diff --git a/sci-libs/pybids/pybids-0.6.5.ebuild b/sci-libs/pybids/pybids-0.6.5.ebuild
new file mode 100644
index 0000000..07367c6
--- /dev/null
+++ b/sci-libs/pybids/pybids-0.6.5.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python package to access BIDS datasets"
+HOMEPAGE="https://github.com/INCF/pybids"
+SRC_URI="https://github.com/INCF/pybids/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	"
+RDEPEND="
+	dev-python/grabbit[${PYTHON_USEDEP}]
+	dev-python/num2words[${PYTHON_USEDEP}]
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/pandas[${PYTHON_USEDEP}]
+	dev-python/patsy[${PYTHON_USEDEP}]
+	dev-python/six[${PYTHON_USEDEP}]
+	sci-libs/nibabel[${PYTHON_USEDEP}]
+	sci-libs/scipy[${PYTHON_USEDEP}]
+	"
+
+RESTRICT="test"
+# Fails because fixtures are called directly
+# https://github.com/bids-standard/pybids/issues/289#issuecomment-476853673
+
+python_test() {
+	rm bids/tests/test_config.py || die
+	distutils_install_for_testing
+	#cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
+	pytest -vv || die
+	die
+}
+