sci-libs/hdf5: Merged in ::gentoo

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=13a327fb0ab75bc211f39035a1df518800115e99

sci-libs/hdf5/Manifest

@@ -1 +0,0 @@
-DIST hdf5-1.12.1.tar.bz2 9724309 SHA256 aaf9f532b3eda83d3d3adc9f8b40a9b763152218fa45349c3bc77502ca1f8f1c SHA512 158a067ee284ccb9e2c4db12e9d37cf187d90d9ef1bed7a6303e2c3a2fd216d7b13a46c5f46018b097511281c4246156b6f917633ca88872f10f0ad04be285fd WHIRLPOOL 1fa4d86b495652d48a662a955a8d0b384d6d996f83a86e8f23e6f3597fa5795294b10302913a771250ebc1dbc5b5a5619268a549cba594b75bd5d7bc9cad52c3

sci-libs/hdf5/files/hdf5-1.12.1-cmake_installdirs.patch

@@ -1,103 +0,0 @@
---- a/c++/src/CMakeLists.txt
-+++ b/c++/src/CMakeLists.txt
-@@ -180,8 +180,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_CPP_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
- 
---- a/CMakeLists.txt
-+++ b/CMakeLists.txt
-@@ -46,6 +46,13 @@
-   endif()
- endif ()
- 
-+include (GNUInstallDirs)
-+set (HDF5_INSTALL_BIN_DIR "${CMAKE_INSTALL_FULL_BINDIR}")
-+set (HDF5_INSTALL_DATA_DIR "${CMAKE_INSTALL_FULL_DATADIR}")
-+set (HDF5_INSTALL_DOC_DIR "${CMAKE_INSTALL_FULL_DOCDIR}")
-+set (HDF5_INSTALL_INCLUDE_DIR "${CMAKE_INSTALL_FULL_INCLUDEDIR}")
-+set (HDF5_INSTALL_LIB_DIR "${CMAKE_INSTALL_FULL_LIBDIR}")
-+
- #-----------------------------------------------------------------------------
- # Instructions for use : Sub-Project Build
- #
---- a/fortran/src/CMakeLists.txt
-+++ b/fortran/src/CMakeLists.txt
-@@ -537,8 +537,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_F90_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
- 
---- a/hl/c++/src/CMakeLists.txt
-+++ b/hl/c++/src/CMakeLists.txt
-@@ -91,8 +91,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_HL_CPP_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
- 
---- a/hl/fortran/src/CMakeLists.txt
-+++ b/hl/fortran/src/CMakeLists.txt
-@@ -324,8 +324,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_HL_F90_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
- 
---- a/hl/src/CMakeLists.txt
-+++ b/hl/src/CMakeLists.txt
-@@ -123,8 +123,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_HL_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
- 
---- a/src/CMakeLists.txt
-+++ b/src/CMakeLists.txt
-@@ -1311,8 +1311,8 @@
- #-----------------------------------------------------------------------------
- set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX})
- set (_PKG_CONFIG_EXEC_PREFIX \${prefix})
--set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib)
--set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include)
-+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR})
-+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR})
- set (_PKG_CONFIG_LIBNAME "${HDF5_LIB_CORENAME}")
- set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}")
- 
-@@ -1419,7 +1419,7 @@
- #  )
-   install (
-       DIRECTORY ${HDF5_BINARY_DIR}/hdf5lib_docs/html
--      DESTINATION ${HDF5_INSTALL_DATA_DIR}
-+      DESTINATION ${HDF5_INSTALL_DOC_DIR}
-       COMPONENT Documents
-   )
- 

sci-libs/hdf5/hdf5-1.12.1.ebuild

@@ -1,123 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-FORTRAN_NEEDED="fortran"
-
-inherit cmake flag-o-matic fortran-2
-
-MY_P="${PN}-${PV/_p/-patch}"
-MAJOR_P="${PN}-$(ver_cut 1-2)"
-
-DESCRIPTION="General purpose library and file format for storing scientific data"
-HOMEPAGE="https://www.hdfgroup.org/HDF5/"
-SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2"
-
-LICENSE="NCSA-HDF"
-SLOT="0/${PV%%_p*}"
-KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cxx debug doc examples fortran +hl mpi ros3 szip test threads unsupported zlib"
-
-REQUIRED_USE="
-	!unsupported? (
-		mpi? ( !cxx !threads )
-		threads? ( !cxx !fortran !hl )
-	)"
-
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-	mpi? ( virtual/mpi[romio] )
-	ros3? (
-		net-misc/curl
-		dev-libs/openssl
-	)
-	szip? ( virtual/szip )
-	zlib? ( sys-libs/zlib:0= )
-"
-DEPEND="${RDEPEND}"
-BDEPEND="doc? (
-	app-doc/doxygen
-	virtual/latex-base
-)"
-
-PATCHES=(
-	"${FILESDIR}"/${PN}-1.12.1-cmake_installdirs.patch
-)
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_setup() {
-	use fortran && fortran-2_pkg_setup
-
-	if use mpi; then
-		if has_version 'sci-libs/hdf5[-mpi]'; then
-			ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail."
-			ewarn "Try to uninstall the current hdf5 prior to enabling mpi support."
-		fi
-		export CC="mpicc"
-		use fortran && export FC="mpif90"
-		append-libs -lmpi
-	elif has_version 'sci-libs/hdf5[mpi]'; then
-		ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail."
-		ewarn "Try to uninstall the current hdf5 prior to disabling mpi support."
-	fi
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-DBUILD_STATIC_LIBS=OFF
-		-DFETCHCONTENT_FULLY_DISCONNECTED=ON
-		-DHDF5_BUILD_EXAMPLES=OFF
-		-DALLOW_UNSUPPORTED=$(usex unsupported)
-		-DBUILD_TESTING=$(usex test)
-		-DHDF5_BUILD_CPP_LIB=$(usex cxx)
-		-DHDF5_BUILD_DOC=$(usex doc)
-		-DHDF5_BUILD_FORTRAN=$(usex fortran)
-		-DHDF5_BUILD_HL_LIB=$(usex hl)
-		-DHDF5_ENABLE_CODESTACK=$(usex debug)
-		-DHDF5_ENABLE_PARALLEL=$(usex mpi)
-		-DHDF5_ENABLE_SZIP_ENCODING=$(usex szip)
-		-DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip)
-		-DHDF5_ENABLE_THREADSAFE=$(usex threads)
-		-DHDF5_ENABLE_Z_LIB_SUPPORT=$(usex zlib)
-		-DHDF5_ENABLE_ROS3_VFD:BOOL=$(usex ros3)
-	)
-	cmake_src_configure
-}
-
-src_install() {
-	cmake_src_install
-
-	# TODO: generate functioning example runners from their respective
-	# .in files - as of version 1.12.1 upstream only has it implemented
-	# for autoconf.
-	if use examples; then
-		# These are all useless outside the source tree
-		rm -f {examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
-		rm -f hl/{examples,c++/examples,fortran/examples}/{Makefile*,CMake*}
-
-		dodoc -r examples
-		if use cxx; then
-			docinto c++
-			dodoc -r c++/examples
-		fi
-		if use fortran; then
-			docinto fortran
-			dodoc -r fortran/examples
-		fi
-		if use hl; then
-			docinto hl
-			dodoc -r hl/examples
-			if use cxx; then
-				docinto hl/c++
-				dodoc -r hl/c++/examples
-			fi
-			if use fortran; then
-				docinto hl/fortran
-				dodoc -r hl/fortran/examples
-			fi
-		fi
-	fi
-}

sci-libs/hdf5/metadata.xml

@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci@gentoo.org</email>
-    <name>Gentoo Science Project</name>
-  </maintainer>
-  <longdescription>
-    HDF5 is a file format and library for storing scientific data. HDF5
-    was designed and implemented to address the deficiencies of HDF4.x. It
-    has a more powerful and flexible data model, supports files larger
-    than 2 GB, and supports parallel I/O.
-  </longdescription>
-  <use>
-    <flag name="hl">Enable high level API (https://support.hdfgroup.org/HDF5/doc/HL/index.html)</flag>
-    <flag name="ros3">Enable support for read-only S3 access (https://portal.hdfgroup.org/display/HDF5/Configuration+and+Setup+for+HDF5+Read+Only+S3+VFD)</flag>
-    <flag name="unsupported">Enable unsupported combinations of configuration options</flag>
-  </use>
-</pkgmetadata>