diff --git a/sci-libs/hdf5/Manifest b/sci-libs/hdf5/Manifest deleted file mode 100644 index 9c78b4a..0000000 --- a/sci-libs/hdf5/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST hdf5-1.12.1.tar.bz2 9724309 SHA256 aaf9f532b3eda83d3d3adc9f8b40a9b763152218fa45349c3bc77502ca1f8f1c SHA512 158a067ee284ccb9e2c4db12e9d37cf187d90d9ef1bed7a6303e2c3a2fd216d7b13a46c5f46018b097511281c4246156b6f917633ca88872f10f0ad04be285fd WHIRLPOOL 1fa4d86b495652d48a662a955a8d0b384d6d996f83a86e8f23e6f3597fa5795294b10302913a771250ebc1dbc5b5a5619268a549cba594b75bd5d7bc9cad52c3 diff --git a/sci-libs/hdf5/files/hdf5-1.12.1-cmake_installdirs.patch b/sci-libs/hdf5/files/hdf5-1.12.1-cmake_installdirs.patch deleted file mode 100644 index 8c4dc34..0000000 --- a/sci-libs/hdf5/files/hdf5-1.12.1-cmake_installdirs.patch +++ /dev/null @@ -1,103 +0,0 @@ ---- a/c++/src/CMakeLists.txt -+++ b/c++/src/CMakeLists.txt -@@ -180,8 +180,8 @@ - #----------------------------------------------------------------------------- - set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) - set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) --set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) --set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) -+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) -+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) - set (_PKG_CONFIG_LIBNAME "${HDF5_CPP_LIB_CORENAME}") - set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") - ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -46,6 +46,13 @@ - endif() - endif () - -+include (GNUInstallDirs) -+set (HDF5_INSTALL_BIN_DIR "${CMAKE_INSTALL_FULL_BINDIR}") -+set (HDF5_INSTALL_DATA_DIR "${CMAKE_INSTALL_FULL_DATADIR}") -+set (HDF5_INSTALL_DOC_DIR "${CMAKE_INSTALL_FULL_DOCDIR}") -+set (HDF5_INSTALL_INCLUDE_DIR "${CMAKE_INSTALL_FULL_INCLUDEDIR}") -+set (HDF5_INSTALL_LIB_DIR "${CMAKE_INSTALL_FULL_LIBDIR}") -+ - #----------------------------------------------------------------------------- - # Instructions for use : Sub-Project Build - # ---- a/fortran/src/CMakeLists.txt -+++ b/fortran/src/CMakeLists.txt -@@ -537,8 +537,8 @@ - #----------------------------------------------------------------------------- - set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) - set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) --set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) --set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) -+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) -+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) - set (_PKG_CONFIG_LIBNAME "${HDF5_F90_LIB_CORENAME}") - set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") - ---- a/hl/c++/src/CMakeLists.txt -+++ b/hl/c++/src/CMakeLists.txt -@@ -91,8 +91,8 @@ - #----------------------------------------------------------------------------- - set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) - set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) --set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) --set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) -+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) -+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) - set (_PKG_CONFIG_LIBNAME "${HDF5_HL_CPP_LIB_CORENAME}") - set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") - ---- a/hl/fortran/src/CMakeLists.txt -+++ b/hl/fortran/src/CMakeLists.txt -@@ -324,8 +324,8 @@ - #----------------------------------------------------------------------------- - set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) - set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) --set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) --set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) -+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) -+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) - set (_PKG_CONFIG_LIBNAME "${HDF5_HL_F90_LIB_CORENAME}") - set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") - ---- a/hl/src/CMakeLists.txt -+++ b/hl/src/CMakeLists.txt -@@ -123,8 +123,8 @@ - #----------------------------------------------------------------------------- - set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) - set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) --set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) --set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) -+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) -+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) - set (_PKG_CONFIG_LIBNAME "${HDF5_HL_LIB_CORENAME}") - set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") - ---- a/src/CMakeLists.txt -+++ b/src/CMakeLists.txt -@@ -1311,8 +1311,8 @@ - #----------------------------------------------------------------------------- - set (_PKG_CONFIG_PREFIX ${CMAKE_INSTALL_PREFIX}) - set (_PKG_CONFIG_EXEC_PREFIX \${prefix}) --set (_PKG_CONFIG_LIBDIR \${exec_prefix}/lib) --set (_PKG_CONFIG_INCLUDEDIR \${prefix}/include) -+set (_PKG_CONFIG_LIBDIR \${exec_prefix}/${CMAKE_INSTALL_LIBDIR}) -+set (_PKG_CONFIG_INCLUDEDIR \${prefix}/${CMAKE_INSTALL_INCLUDEDIR}) - set (_PKG_CONFIG_LIBNAME "${HDF5_LIB_CORENAME}") - set (_PKG_CONFIG_VERSION "${HDF5_PACKAGE_VERSION}") - -@@ -1419,7 +1419,7 @@ - # ) - install ( - DIRECTORY ${HDF5_BINARY_DIR}/hdf5lib_docs/html -- DESTINATION ${HDF5_INSTALL_DATA_DIR} -+ DESTINATION ${HDF5_INSTALL_DOC_DIR} - COMPONENT Documents - ) - diff --git a/sci-libs/hdf5/hdf5-1.12.1.ebuild b/sci-libs/hdf5/hdf5-1.12.1.ebuild deleted file mode 100644 index 2075608..0000000 --- a/sci-libs/hdf5/hdf5-1.12.1.ebuild +++ /dev/null @@ -1,123 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -FORTRAN_NEEDED="fortran" - -inherit cmake flag-o-matic fortran-2 - -MY_P="${PN}-${PV/_p/-patch}" -MAJOR_P="${PN}-$(ver_cut 1-2)" - -DESCRIPTION="General purpose library and file format for storing scientific data" -HOMEPAGE="https://www.hdfgroup.org/HDF5/" -SRC_URI="https://www.hdfgroup.org/ftp/HDF5/releases/${MAJOR_P}/${MY_P}/src/${MY_P}.tar.bz2" - -LICENSE="NCSA-HDF" -SLOT="0/${PV%%_p*}" -KEYWORDS="~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~ppc ~ppc64 ~riscv ~sparc ~x86 ~amd64-linux ~x86-linux" -IUSE="cxx debug doc examples fortran +hl mpi ros3 szip test threads unsupported zlib" - -REQUIRED_USE=" - !unsupported? ( - mpi? ( !cxx !threads ) - threads? ( !cxx !fortran !hl ) - )" - -RESTRICT="!test? ( test )" - -RDEPEND=" - mpi? ( virtual/mpi[romio] ) - ros3? ( - net-misc/curl - dev-libs/openssl - ) - szip? ( virtual/szip ) - zlib? ( sys-libs/zlib:0= ) -" -DEPEND="${RDEPEND}" -BDEPEND="doc? ( - app-doc/doxygen - virtual/latex-base -)" - -PATCHES=( - "${FILESDIR}"/${PN}-1.12.1-cmake_installdirs.patch -) - -S="${WORKDIR}/${MY_P}" - -pkg_setup() { - use fortran && fortran-2_pkg_setup - - if use mpi; then - if has_version 'sci-libs/hdf5[-mpi]'; then - ewarn "Installing hdf5 with mpi enabled with a previous hdf5 with mpi disabled may fail." - ewarn "Try to uninstall the current hdf5 prior to enabling mpi support." - fi - export CC="mpicc" - use fortran && export FC="mpif90" - append-libs -lmpi - elif has_version 'sci-libs/hdf5[mpi]'; then - ewarn "Installing hdf5 with mpi disabled while having hdf5 installed with mpi enabled may fail." - ewarn "Try to uninstall the current hdf5 prior to disabling mpi support." - fi -} - -src_configure() { - local mycmakeargs=( - -DBUILD_STATIC_LIBS=OFF - -DFETCHCONTENT_FULLY_DISCONNECTED=ON - -DHDF5_BUILD_EXAMPLES=OFF - -DALLOW_UNSUPPORTED=$(usex unsupported) - -DBUILD_TESTING=$(usex test) - -DHDF5_BUILD_CPP_LIB=$(usex cxx) - -DHDF5_BUILD_DOC=$(usex doc) - -DHDF5_BUILD_FORTRAN=$(usex fortran) - -DHDF5_BUILD_HL_LIB=$(usex hl) - -DHDF5_ENABLE_CODESTACK=$(usex debug) - -DHDF5_ENABLE_PARALLEL=$(usex mpi) - -DHDF5_ENABLE_SZIP_ENCODING=$(usex szip) - -DHDF5_ENABLE_SZIP_SUPPORT=$(usex szip) - -DHDF5_ENABLE_THREADSAFE=$(usex threads) - -DHDF5_ENABLE_Z_LIB_SUPPORT=$(usex zlib) - -DHDF5_ENABLE_ROS3_VFD:BOOL=$(usex ros3) - ) - cmake_src_configure -} - -src_install() { - cmake_src_install - - # TODO: generate functioning example runners from their respective - # .in files - as of version 1.12.1 upstream only has it implemented - # for autoconf. - if use examples; then - # These are all useless outside the source tree - rm -f {examples,c++/examples,fortran/examples}/{Makefile*,CMake*} - rm -f hl/{examples,c++/examples,fortran/examples}/{Makefile*,CMake*} - - dodoc -r examples - if use cxx; then - docinto c++ - dodoc -r c++/examples - fi - if use fortran; then - docinto fortran - dodoc -r fortran/examples - fi - if use hl; then - docinto hl - dodoc -r hl/examples - if use cxx; then - docinto hl/c++ - dodoc -r hl/c++/examples - fi - if use fortran; then - docinto hl/fortran - dodoc -r hl/fortran/examples - fi - fi - fi -} diff --git a/sci-libs/hdf5/metadata.xml b/sci-libs/hdf5/metadata.xml deleted file mode 100644 index 042059b..0000000 --- a/sci-libs/hdf5/metadata.xml +++ /dev/null @@ -1,19 +0,0 @@ - - - - - sci@gentoo.org - Gentoo Science Project - - - HDF5 is a file format and library for storing scientific data. HDF5 - was designed and implemented to address the deficiencies of HDF4.x. It - has a more powerful and flexible data model, supports files larger - than 2 GB, and supports parallel I/O. - - - Enable high level API (https://support.hdfgroup.org/HDF5/doc/HL/index.html) - Enable support for read-only S3 access (https://portal.hdfgroup.org/display/HDF5/Configuration+and+Setup+for+HDF5+Read+Only+S3+VFD) - Enable unsupported combinations of configuration options - -