From ac5491ca2123655bb7b57c9dbeee33e186763e76 Mon Sep 17 00:00:00 2001 From: setina42 Date: Fri, 14 Dec 2018 12:53:14 +0000 Subject: [PATCH] live ebuild for setina42/nilearn --- sci-biology/nilearn/Manifest | 1 + sci-biology/nilearn/nilearn-9999.ebuild | 57 +++++++++++++++++++++++++ 2 files changed, 58 insertions(+) create mode 100644 sci-biology/nilearn/Manifest create mode 100644 sci-biology/nilearn/nilearn-9999.ebuild diff --git a/sci-biology/nilearn/Manifest b/sci-biology/nilearn/Manifest new file mode 100644 index 0000000..983a02d --- /dev/null +++ b/sci-biology/nilearn/Manifest @@ -0,0 +1 @@ +EBUILD nilearn-9999.ebuild 1451 BLAKE2B 61bef86963cb972874a017a65997c71b7c7f48ac7d80d20dd33dbdbda41a7b1ca201b69312e5284d7887149acd5189b3e57cc33529ab905f14db220388952c9c SHA512 f09fa808a199e2698a52c18fc4ca2a1a2d5c84f8067db817f555963a64195be8212a5562dbd7d3d6364f9873eafbd63a262737997b6021a7144679a7a9b13b75 diff --git a/sci-biology/nilearn/nilearn-9999.ebuild b/sci-biology/nilearn/nilearn-9999.ebuild new file mode 100644 index 0000000..37f4ff1 --- /dev/null +++ b/sci-biology/nilearn/nilearn-9999.ebuild @@ -0,0 +1,57 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) + +inherit distutils-r1 git-r3 + +DESCRIPTION="Fast and easy statistical learning on NeuroImaging data" +HOMEPAGE="http://nilearn.github.io/" +SRC_URI="" +EGIT_REPO_URI="https://github.com/setina42/nilearn" +EGIT_BRANCH="TiledSlicer" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="" +IUSE="+plot test" + +DEPEND=" + test? ( + ${RDEPEND} + dev-python/nose[${PYTHON_USEDEP}] + ) + dev-python/setuptools[${PYTHON_USEDEP}] + " +RDEPEND=" + dev-python/joblib[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + sci-libs/scikits_learn[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + sci-libs/nibabel[${PYTHON_USEDEP}] + plot? ( dev-python/matplotlib[${PYTHON_USEDEP}] )" + +# (Temporarily) commented out, since Gentoo sci-libs/scikits_learn decided it +# is a mess to maintain system joblib usage +#PATCHES=( "${FILESDIR}/0.4.1-bundled_joblib_test.patch" ) + +python_prepare_all() { + # upstream is reluctant to *not* depend on bundled scikits_learn: + # https://github.com/nilearn/nilearn/pull/1398 + #local f + #for f in nilearn/{*/*/,*/,}*.py; do + # sed -r \ + # -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \ + # -e 's/from (sklearn|\.|)\.externals import/import/' \ + # -i $f || die + #done + + distutils-r1_python_prepare_all +} + +python_test() { + echo "backend: Agg" > matplotlibrc + MPLCONFIGDIR=. nosetests -v || die +}