diff --git a/sci-biology/neuroconv/Manifest b/sci-biology/neuroconv/Manifest new file mode 100644 index 0000000..f08da0d --- /dev/null +++ b/sci-biology/neuroconv/Manifest @@ -0,0 +1 @@ +DIST neuroconv-0.2.4_p20230413.gh.tar.gz 912786 BLAKE2B 1552db2d3968f1c58caef3f3812087aa6307d37c253c2e4c42401fe97c3ecfe7d22835d8db6122dd0bf7ba41f101fb1be0c24d1fd29e6f9eef3d2e250c9a722a SHA512 4b5724d368e81dbfd87271eeb4b83312cce616c02dce6ac35d7a7094de973672b26437b3604b5178609d085e19817b7fbfb9fc151b165d9cde74e8059bfae0e1 diff --git a/sci-biology/neuroconv/metadata.xml b/sci-biology/neuroconv/metadata.xml new file mode 100644 index 0000000..efd0064 --- /dev/null +++ b/sci-biology/neuroconv/metadata.xml @@ -0,0 +1,21 @@ + + + + + gentoo@chymera.eu + Horea Christian + + + sci@gentoo.org + Gentoo Science Project + + + Extracellular electrophysiology interfaces + Intracellular electrophysiology interfaces + Optical physiology interfaces + + + catalystneuro/roiextractors + roiextractors + + diff --git a/sci-biology/neuroconv/neuroconv-0.2.4_p20230413.ebuild b/sci-biology/neuroconv/neuroconv-0.2.4_p20230413.ebuild new file mode 100644 index 0000000..f4c9622 --- /dev/null +++ b/sci-biology/neuroconv/neuroconv-0.2.4_p20230413.ebuild @@ -0,0 +1,60 @@ +# Copyright 2021-2023 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +P_HASH="924e41a917f38222f0b8c51ba5bdff13485b8a03" + +PYTHON_COMPAT=( python3_{10..11} ) +DISTUTILS_USE_PEP517=setuptools +inherit distutils-r1 + +DESCRIPTION="Create NWB files from proprietary formats." +HOMEPAGE="https://github.com/catalystneuro/neuroconv" +SRC_URI="https://github.com/catalystneuro/neuroconv/archive/${P_HASH}.tar.gz -> ${P}.gh.tar.gz" + +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64" +IUSE="+ecephys +icephys +ophys" + +RDEPEND=" + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/hdmf[${PYTHON_USEDEP}] + dev-python/jsonschema[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/pandas[${PYTHON_USEDEP}] + dev-python/psutil[${PYTHON_USEDEP}] + dev-python/pynwb[${PYTHON_USEDEP}] + dev-python/pyyaml[${PYTHON_USEDEP}] + dev-python/scipy[${PYTHON_USEDEP}] + dev-python/tqdm[${PYTHON_USEDEP}] + dev-vcs/dandi-cli[${PYTHON_USEDEP}] + ecephys? ( + dev-python/spikeinterface[${PYTHON_USEDEP}] + ) + icephys? ( + dev-python/neo[${PYTHON_USEDEP}] + ) + ophys? ( + sci-biology/roiextractors[${PYTHON_USEDEP}] + ) +" +BDEPEND=" + test? ( + dev-python/parameterized[${PYTHON_USEDEP}] + ) +" + +S="${WORKDIR}/${PN}-${P_HASH}" + +distutils_enable_tests pytest + +python_test() { + # Additional tests require complex data getting infrastructure, ophys tests still have issues: + # https://github.com/catalystneuro/neuroconv/issues/305 + local my_tests=( "tests/test_minimal" ) + use ecephys && my_tests+=( "tests/test_ecephys" ) + #use ophys && my_tests+=( "tests/test_ophys" ) + epytest ${my_tests[*]// /|} +}