dev-python/neo: merged in Gentoo ::science
https://gitweb.gentoo.org/proj/sci.git/commit/?id=a020e3fc5daa38926c05fedc5d4de784f26cc172
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Horea Christian
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DIST neo-0.11.0.tar.gz 9411608 BLAKE2B 9257fd8ff9eea8ec80b0a4eb701b63a9db10d51e6f145b704eb5e9a394dd13a5c6e567cb3469fa4d86f538637f80e9c660823d358bb7ddfd651291dc5df73450 SHA512 dab4832317c8dc6a794ffc9fb118124734fa2428c0527eb9c86bc3d35195a34bdb162bc0a44a3604cb8067fff7263ab5b106c0f9871007a093e7185df5ba9993
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DIST neo-0.11.1.tar.gz 3906151 BLAKE2B 26b60c715d6f3ec017cdb909c1f54b1509db4862f0630ab6d60b4b07153d5cb8512fbf16dd9039d1998b08e0f9e828bb271d4f482cc2d34a5d17a010ef4d203b SHA512 1f93a9eea020ee40f792f038bef76e053ff4f6e05951f78afa70bf4009bac3da8222be57c2cee88ae5e7539c5c8978cf50bf52cce787dbacafe6d5450d5e1aa7
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<?xml version='1.0' encoding='UTF-8'?>
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
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<pkgmetadata>
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<maintainer type="person">
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<email>gentoo@chymera.eu</email>
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<name>Horea Christian</name>
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</maintainer>
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<maintainer type="project">
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<email>sci@gentoo.org</email>
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<name>Gentoo Science Project</name>
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</maintainer>
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<longdescription lang="en">
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Neo is a Python package for working with electrophysiology data in Python,
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together with support for reading a wide range of neurophysiology file
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formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock,
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Plexon, Tdt, and support for writing to a subset of these formats plus
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non-proprietary formats including HDF5.
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</longdescription>
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<upstream>
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<remote-id type="github">NeuralEnsemble/python-neo</remote-id>
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<remote-id type="pypi">neo</remote-id>
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</upstream>
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</pkgmetadata>
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# Copyright 2021-2023 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{10..10} )
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DISTUTILS_USE_PEP517=setuptools
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inherit distutils-r1
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MY_PN="python-neo"
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DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
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HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
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SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64"
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IUSE="test"
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RDEPEND="
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/quantities[${PYTHON_USEDEP}]
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"
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BDEPEND="
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test? (
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${RDEPEND}
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dev-python/scipy[${PYTHON_USEDEP}]
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dev-python/h5py[${PYTHON_USEDEP}]
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dev-python/matplotlib[${PYTHON_USEDEP}]
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dev-python/pillow[${PYTHON_USEDEP}]
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dev-python/probeinterface[${PYTHON_USEDEP}]
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dev-python/pynwb[${PYTHON_USEDEP}]
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dev-python/tqdm[${PYTHON_USEDEP}]
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dev-vcs/datalad[${PYTHON_USEDEP}]
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)
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"
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# Testing deps also need:
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# igor
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# pyedflib https://github.com/holgern/pyedflib
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# klusta
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# nixio
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# sonpy
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# ipython
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S="${WORKDIR}/${MY_PN}-${PV}"
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distutils_enable_tests pytest
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EPYTEST_DESELECT=(
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neo/test/utils/test_datasets.py::TestDownloadDataset::test_download_dataset
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)
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# Reported upstream
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# https://github.com/NeuralEnsemble/python-neo/issues/1037
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python_test() {
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local EPYTEST_IGNORE=(
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neo/test/iotest/*
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neo/test/rawiotest/*
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)
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epytest
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}
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# Copyright 2021-2023 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{10..10} )
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DISTUTILS_USE_PEP517=setuptools
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inherit distutils-r1
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DESCRIPTION="Read and represent a wide range of neurophysiology file formats in Python"
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HOMEPAGE="https://github.com/NeuralEnsemble/python-neo"
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SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
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#SRC_URI="https://github.com/NeuralEnsemble/python-neo/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64"
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IUSE="test"
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RDEPEND="
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/quantities[${PYTHON_USEDEP}]
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"
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BDEPEND="
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test? (
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${RDEPEND}
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dev-python/scipy[${PYTHON_USEDEP}]
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dev-python/h5py[${PYTHON_USEDEP}]
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dev-python/matplotlib[${PYTHON_USEDEP}]
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dev-python/pillow[${PYTHON_USEDEP}]
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dev-python/probeinterface[${PYTHON_USEDEP}]
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dev-python/pynwb[${PYTHON_USEDEP}]
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dev-python/tqdm[${PYTHON_USEDEP}]
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dev-vcs/datalad[${PYTHON_USEDEP}]
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)
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"
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# Testing deps also need:
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# igor
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# pyedflib https://github.com/holgern/pyedflib
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# klusta
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# nixio
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# sonpy
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# ipython
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distutils_enable_tests pytest
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# Reported upstream
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# https://github.com/NeuralEnsemble/python-neo/issues/1037
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python_test() {
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local EPYTEST_IGNORE=(
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neo/test/iotest/*
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neo/test/rawiotest/*
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)
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epytest
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}
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