56 lines
1.4 KiB
Bash
56 lines
1.4 KiB
Bash
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# Copyright 2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{8..9} )
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# 3.10 missing on numba and spyking-circus
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inherit distutils-r1
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DESCRIPTION="A Python-based module for creating flexible and robust spike sorting pipelines."
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HOMEPAGE="https://github.com/SpikeInterface/spikeinterface"
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SRC_URI="https://github.com/SpikeInterface/spikeinterface/archive/refs/tags/${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="MIT"
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SLOT="0"
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KEYWORDS="~amd64"
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IUSE="test"
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RESTRICT="test"
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# Tests fail, checking with upstream
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# https://github.com/SpikeInterface/spikeinterface/issues/307
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DEPEND="
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${RDEPEND}
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test? (
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dev-python/loky[${PYTHON_USEDEP}]
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dev-python/numba[${PYTHON_USEDEP}]
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dev-python/tridesclous[${PYTHON_USEDEP}]
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sci-libs/spyking-circus[${PYTHON_USEDEP}]
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dev-vcs/datalad
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)
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"
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RDEPEND="
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dev-python/joblib[${PYTHON_USEDEP}]
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dev-python/neo[${PYTHON_USEDEP}]
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dev-python/numpy[${PYTHON_USEDEP}]
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dev-python/probeinterface[${PYTHON_USEDEP}]
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dev-python/tqdm[${PYTHON_USEDEP}]
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"
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# also needs:
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# dev-python/PyQt5
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# hbdscan
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# shybird
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# herdingspikes
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# might also need:
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# dev-vcs/git-annex
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# dev-python/matplotlib[${PYTHON_USEDEP}]
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# sci-libs/scikit-learn[${PYTHON_USEDEP}]
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# dev-python/networkx[${PYTHON_USEDEP}]
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# dev-python/pybind11[${PYTHON_USEDEP}]
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# dev-python/pillow[${PYTHON_USEDEP}]
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# dev-python/pandas[${PYTHON_USEDEP}]
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# dev-python/h5py[${PYTHON_USEDEP}]
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BDEPEND=""
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distutils_enable_tests pytest
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