159 lines
5.1 KiB
Diff
159 lines
5.1 KiB
Diff
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diff --git a/build b/build
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index 6827443..19b2002 100755
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--- a/build
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+++ b/build
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@@ -3,7 +3,7 @@
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if [ $# -ge 1 ] ; then
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PROJECTS="$@";
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else
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- MASTERPROJECTS="CiftiLib-master utils znzlib NewNifti niftiio fslio giftiio miscmaths newimage libhfunc libvis first_lib \
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+ MASTERPROJECTS="utils znzlib NewNifti niftiio fslio giftiio miscmaths newimage libhfunc libvis first_lib \
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meshclass fslvtkio misc_tcl basisfield warpfns bint shapeModel MVdisc fslvtkconv fslsurface libmeshutils newmesh \
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DiscreteOpt FastPDlib MSMRegLib \
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misc_c avwutils basil bet2 cluster dpm copain tissue fast4 feat5 film filmbabe flirt fabber baycest \
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@@ -25,8 +25,8 @@ flameo oxford_asl relax qboot topup ptx2 lesions eddy dwssfp verbena MSM bianca
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done
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fi
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-echo "Building projects - see build.log file for progress..."
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-./config/common/buildproj $PROJECTS > ./build.log 2>&1
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+echo "Building projects"
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+./config/common/buildproj $PROJECTS
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finalStatus=$?
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if [ $finalStatus -eq 0 ]; then
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echo "Build completed successfully.";
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diff --git a/config/common/buildproj b/config/common/buildproj
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index 3450bda..ec3edc1 100755
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--- a/config/common/buildproj
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+++ b/config/common/buildproj
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@@ -11,10 +11,10 @@ if [ X$1 = X-strict ] ; then
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fi
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PROJECTS="$@" ; export PROJECTS ;
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-FSLDIR=`pwd`
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+#FSLDIR=`pwd`
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FSLDEVDIR=${FSLDIR}
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FSLCONFDIR=${FSLDIR}/config
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-FSLMACHTYPE=`${FSLDIR}/etc/fslconf/fslmachtype.sh`
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+#FSLMACHTYPE=`${FSLDIR}/etc/fslconf/fslmachtype.sh`
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export FSLDIR FSLDEVDIR FSLCONFDIR FSLMACHTYPE
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buildmessages="" ; export buildmessages ;
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@@ -66,7 +66,7 @@ for projname in $PROJECTS; do
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if [ -x ./fslconfig ] ; then
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. ./fslconfig ;
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fi
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- if ${MAKE} -k ${MAKEOPTIONS} ; then
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+ if ${MAKE} ${MAKEOPTIONS} ${MAKEOPTS} ; then
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if ${MAKE} ${MAKEOPTIONS} install ; then
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installok=true;
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# Clean up after ourselves
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@@ -81,6 +81,7 @@ for projname in $PROJECTS; do
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if [ $installok = false ] ; then
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echo " "
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echo "ERROR::Could not install $projname successfully" ;
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+ exit 1
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fi
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else
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echo " "
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@@ -89,6 +90,7 @@ for projname in $PROJECTS; do
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echo " "
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echo " "
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errorprojs="$errorprojs $projname" ; export errorprojs ;
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+ exit 1
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fi
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fi
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done
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diff --git a/config/common/vars.mk b/config/common/vars.mk
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index 53754be..ff7a117 100755
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--- a/config/common/vars.mk
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+++ b/config/common/vars.mk
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@@ -24,15 +24,15 @@ USRINCFLAGS =
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USRCFLAGS =
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USRCXXFLAGS =
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-LDFLAGS = ${ARCHLDFLAGS} ${USRLDFLAGS} -L. -L${DEVLIBDIR} -L${LIBDIR}
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+LDFLAGS = ${ARCHLDFLAGS} ${USRLDFLAGS} -L. -L${DEVLIBDIR} -L${LIBDIR} ${USERLDFLAGS}
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-AccumulatedIncFlags = -I${INC_BOOST} ${USRINCFLAGS} -I. -I${DEVINCDIR} -I${INCDIR}
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+AccumulatedIncFlags = ${USRINCFLAGS} -I. -I${DEVINCDIR} -I${INCDIR} ${CPPFLAGS}
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CFLAGS = ${ANSI_FLAGS} ${ANSI_CFLAGS} ${DBGFLAGS} ${USEDCSTATICFLAGS} ${USRCFLAGS} ${ARCHFLAGS} ${OPTFLAGS} \
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- ${AccumulatedIncFlags}
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+ ${AccumulatedIncFlags} ${USERCFLAGS}
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-CXXFLAGS = ${ANSI_FLAGS} ${ANSI_CXXFLAGS} ${DBGFLAGS} ${USEDCXXSTATICFLAGS} ${USRCXXFLAGS} ${ARCHFLAGS} ${OPTFLAGS} \
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- ${AccumulatedIncFlags}
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+CXXFLAGS = ${ANSI_CXXFLAGS} ${DBGFLAGS} ${USEDCXXSTATICFLAGS} ${USRCXXFLAGS} ${ARCHFLAGS} ${OPTFLAGS} \
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+ ${AccumulatedIncFlags} ${USERCXXFLAGS}
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HFILES = *.h
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AFILES = *.a
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diff --git a/config/generic/systemvars.mk b/config/generic/systemvars.mk
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index e40e3d6..ddb5bfe 100755
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--- a/config/generic/systemvars.mk
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+++ b/config/generic/systemvars.mk
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@@ -4,20 +4,20 @@ SHELL = /bin/sh
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# System dependent commands (NB: the first two are the most platform dependent)
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-INSTALL = ginstall -p
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-RANLIB = ranlib
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+INSTALL = install -p
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+RANLIB = @@GENTOO_RANLIB@@
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RM = /bin/rm
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CP = /bin/cp
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MV = /bin/mv
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CHMOD = /bin/chmod
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MKDIR = /bin/mkdir
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-TCLSH = ${FSLDIR}/bin/fsltclsh
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+TCLSH = tclsh
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# Compiler dependent variables
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-CC = gcc
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-CXX = c++
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+CC = @@GENTOO_CC@@
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+CXX = @@GENTOO_CXX@@
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CSTATICFLAGS = -static
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CXXSTATICFLAGS = -static
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@@ -25,7 +25,7 @@ ARCHFLAGS =
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DEPENDFLAGS = -MM
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-OPTFLAGS = -O3 -fexpensive-optimizations ${ARCHFLAGS}
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+OPTFLAGS =
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MACHDBGFLAGS =
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GNU_ANSI_FLAGS = -Wall -ansi -pedantic
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SGI_ANSI_FLAGS = -ansi -fullwarn
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diff --git a/extras/build b/extras/build
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index 6133a1b..caeae2d 100755
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--- a/extras/build
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+++ b/extras/build
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@@ -104,8 +104,8 @@ PROJECTS="${PROJECTS} libpng"
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if [ ${BUILDICONV} -eq 1 ]; then
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PROJECTS="${PROJECTS} libiconv"
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fi
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-PROJECTS="${PROJECTS} libgd libgdc libprob libcprob newmat cprob newran fftw"
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-PROJECTS="${PROJECTS} boost libxml2-2.9.2 libxml++-2.34.0 libsqlite libnlopt ../include/armawrap/dummy_newmat"
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+PROJECTS="libgdc libprob libcprob newmat cprob newran"
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+PROJECTS="${PROJECTS} ../include/armawrap/dummy_newmat"
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for projname in $PROJECTS; do
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if [ -d $FSLESRCDIR/$projname ] ; then
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buildIt $FSLESRCDIR $projname 1
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diff --git a/src/mist-clean/Makefile b/src/mist-clean/Makefile
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index b3a32fc..e949ba1 100755
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--- a/src/mist-clean/Makefile
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+++ b/src/mist-clean/Makefile
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@@ -52,7 +52,7 @@ installpython:
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cp -r python/* ${DESTDIR}/python/mist
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clean:
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- rm ${OBJS} mist/mist.o mist/mist
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+ rm -f ${OBJS} mist/mist.o mist/mist || echo "CLEAN could not locate some files scheduled for deletion."
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.PHONY: all clean installdata
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