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Fix summary links

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Henry Fredrick Schreiner 2017-10-21 22:36:22 -04:00
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## Making a CMakeLists
* [Introduction to the Basics](chapters/basics.md)
* [Variables and the Cache](chapters/options)
* [Variables and the Cache](chapters/options.md)
* [C++11 and Beyond](chapters/cpp11.md)
* [Adding Features](chapters/features.md)
* [How to Structure Your Project](chapters/structure.md)
* [Including Small Projects](chapters/smallinc.md)
* [~~Including Large Projects~~](chapters/largeinc.md)
* [~~Running Other Programs~~](chapters/programs.md)
* [~~Testing~~](chapters/testing.md)
* [~~Tidy and Format~~](chapters/testing.md)
* [~~IDEs~~](chapters/IDEs.md)
* [~~Debugging~~](chapters/IDEs.md)
* ~~[Including Large Projects](chapters/largeinc.md)~~
* ~~[Running Other Programs](chapters/programs.md)~~
* ~~[Testing](chapters/testing.md)~~
* ~~[Tidy and Format](chapters/tidy.md)~~
* ~~[IDEs](chapters/IDEs.md)~~
* ~~[Debugging](chapters/debug.md)~~
## Specific packages
* [~~CUDA~~](specifics/CUDA.md)
* [~~OpenMP~~](specifics/OpenMP.md)
* [~~Boost~~](specifics/Boost.md)
* [~~MPI~~](specifics/MPI.md)
* [~~ROOT~~](specifics/ROOT.md)
* ~~[CUDA](specifics/CUDA.md)~~
* ~~[OpenMP](specifics/OpenMP.md)~~
* ~~[Boost](specifics/Boost.md)~~
* ~~[MPI](specifics/MPI.md)~~
* ~~[ROOT](specifics/ROOT.md)~~