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Code Issues Releases Wiki Activity

added iqss rmarkdown beamer template, added metropolis vignette

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Dirk Eddelbuettel 2018-09-16 08:28:08 -05:00
parent bdcf979276
commit 25a1a71caa
20 changed files with 1544 additions and 13 deletions
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378
inst/rmarkdown/templates/iqss/resources/template.tex Normal file
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\PassOptionsToPackage{unicode=true}{hyperref} % options for packages loaded elsewhere
\PassOptionsToPackage{hyphens}{url}
\documentclass[$if(fontsize)$$fontsize$,$endif$$if(lang)$$babel-lang$,$endif$$if(handout)$handout,$endif$$if(colorlinks)$dvipsnames,$endif$$if(beamer)$ignorenonframetext,$endif$$for(classoption)$$classoption$$sep$,$endfor$]{$documentclass$}
\setbeamertemplate{caption}[numbered]
\setbeamertemplate{caption label separator}{: }
\setbeamercolor{caption name}{fg=normal text.fg}
\beamertemplatenavigationsymbols$if(navigation)$$navigation$$else$empty$endif$
$if(fontfamily)$
\usepackage[$for(fontfamilyoptions)$$fontfamilyoptions$$sep$,$endfor$]{$fontfamily$}
$else$
\usepackage{lmodern}
$endif$
\usepackage{amssymb}
\usepackage{amsmath}
\usepackage{ifxetex,ifluatex}
\usepackage{fixltx2e} % provides \textsubscript
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
\usepackage[$if(fontenc)$$fontenc$$else$T1$endif$]{fontenc}
\usepackage[utf8]{inputenc}
$if(euro)$
\usepackage{eurosym}
$endif$
\else % if luatex or xelatex
\ifxetex
\usepackage{mathspec}
\else
\usepackage{fontspec}
\fi
\defaultfontfeatures{Ligatures=TeX,Scale=MatchLowercase}
$for(fontfamilies)$
\newfontfamily{$fontfamilies.name$}[$fontfamilies.options$]{$fontfamilies.font$}
$endfor$
$if(euro)$
\newcommand{\euro}{€}
$endif$
$if(mainfont)$
\setmainfont[$for(mainfontoptions)$$mainfontoptions$$sep$,$endfor$]{$mainfont$}
$endif$
$if(sansfont)$
\setsansfont[$for(sansfontoptions)$$sansfontoptions$$sep$,$endfor$]{$sansfont$}
$endif$
$if(monofont)$
\setmonofont[Mapping=tex-ansi$if(monofontoptions)$,$for(monofontoptions)$$monofontoptions$$sep$,$endfor$$endif$]{$monofont$}
$endif$
%$if(mathfont)$
% \setmathfont(Digits,Latin,Greek)[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
%$endif$
$if(CJKmainfont)$
\usepackage{xeCJK}
\setCJKmainfont[$for(CJKoptions)$$CJKoptions$$sep$,$endfor$]{$CJKmainfont$}
$endif$
\fi
$if(theme)$
\usetheme[$for(themeoptions)$$themeoptions$$sep$,$endfor$]{$theme$}
$endif$
$if(colortheme)$
\usecolortheme{$colortheme$}
$endif$
$if(fonttheme)$
\usefonttheme{$fonttheme$}
$endif$
$if(mainfont)$
\usefonttheme{serif} % use mainfont rather than sansfont for slide text
$endif$
$if(innertheme)$
\useinnertheme{$innertheme$}
$endif$
$if(outertheme)$
\useoutertheme{$outertheme$}
$endif$
% use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
% use microtype if available
\IfFileExists{microtype.sty}{%
\usepackage{microtype}
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
$if(lang)$
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
\usepackage[shorthands=off,$for(babel-otherlangs)$$babel-otherlangs$,$endfor$main=$babel-lang$]{babel}
$if(babel-newcommands)$
$babel-newcommands$
$endif$
\else
\usepackage{polyglossia}
\setmainlanguage[$polyglossia-lang.options$]{$polyglossia-lang.name$}
$for(polyglossia-otherlangs)$
\setotherlanguage[$polyglossia-otherlangs.options$]{$polyglossia-otherlangs.name$}
$endfor$
\fi
$endif$
\newif\ifbibliography
$if(natbib)$
\usepackage[round]{natbib}
\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
$endif$
$if(biblatex)$
\usepackage[$if(biblio-style)$style=$biblio-style$,$endif$$for(biblatexoptions)$$biblatexoptions$$sep$,$endfor$]{biblatex}
$for(bibliography)$
\addbibresource{$bibliography$}
$endfor$
$endif$
$if(verbatim-in-note)$
\usepackage{fancyvrb}
$endif$
\hypersetup{
$if(title-meta)$
pdftitle={$title-meta$},
$endif$
$if(author-meta)$
pdfauthor={$author-meta$},
$endif$
$if(keywords)$
pdfkeywords={$for(keywords)$$keywords$$sep$, $endfor$},
$endif$
$if(colorlinks)$
colorlinks=true,
linkcolor=$if(linkcolor)$$linkcolor$$else$Maroon$endif$,
citecolor=$if(citecolor)$$citecolor$$else$Blue$endif$,
urlcolor=$if(urlcolor)$$urlcolor$$else$Blue$endif$,
$else$
pdfborder={0 0 0},
$endif$
breaklinks=true}
%\urlstyle{same} % Use monospace font for urls
$if(verbatim-in-note)$
\VerbatimFootnotes % allows verbatim text in footnotes
$endif$
$if(listings)$
\usepackage{listings}
$endif$
$if(lhs)$
\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{}
$endif$
$if(highlighting-macros)$
$highlighting-macros$
$endif$
$if(tables)$
\usepackage{longtable,booktabs}
\usepackage{caption}
% These lines are needed to make table captions work with longtable:
\makeatletter
\def\fnum@table{\tablename~\thetable}
\makeatother
$endif$
$if(graphics)$
\usepackage{graphicx,grffile}
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
\def\maxheight{\ifdim\Gin@nat@height>\textheight0.8\textheight\else\Gin@nat@height\fi}
\makeatother
% Scale images if necessary, so that they will not overflow the page
% margins by default, and it is still possible to overwrite the defaults
% using explicit options in \includegraphics[width, height, ...]{}
\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio}
$endif$
% Prevent slide breaks in the middle of a paragraph:
\widowpenalties 1 10000
\raggedbottom
$if(section-titles)$
\AtBeginPart{
\let\insertpartnumber\relax
\let\partname\relax
\frame{\partpage}
}
\AtBeginSection{
\ifbibliography
\else
\let\insertsectionnumber\relax
\let\sectionname\relax
\frame{\sectionpage}
\fi
}
\AtBeginSubsection{
\let\insertsubsectionnumber\relax
\let\subsectionname\relax
\frame{\subsectionpage}
}
$endif$
$if(links-as-notes)$
% Make links footnotes instead of hotlinks:
\renewcommand{\href}[2]{#2\footnote{\url{#1}}}
$endif$
$if(strikeout)$
\usepackage[normalem]{ulem}
% avoid problems with \sout in headers with hyperref:
\pdfstringdefDisableCommands{\renewcommand{\sout}{}}
$endif$
\setlength{\parindent}{0pt}
\setlength{\parskip}{6pt plus 2pt minus 1pt}
\setlength{\emergencystretch}{3em} % prevent overfull lines
\providecommand{\tightlist}{%
\setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
$if(numbersections)$
\setcounter{secnumdepth}{$if(secnumdepth)$$secnumdepth$$else$5$endif$}
$else$
\setcounter{secnumdepth}{0}
$endif$
$if(dir)$
\ifxetex
% load bidi as late as possible as it modifies e.g. graphicx
$if(latex-dir-rtl)$
\usepackage[RTLdocument]{bidi}
$else$
\usepackage{bidi}
$endif$
\fi
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
\TeXXeTstate=1
\newcommand{\RL}[1]{\beginR #1\endR}
\newcommand{\LR}[1]{\beginL #1\endL}
\newenvironment{RTL}{\beginR}{\endR}
\newenvironment{LTR}{\beginL}{\endL}
\fi
$endif$
$for(header-includes)$
$header-includes$
$endfor$
%% IQSS overrides
\iqsssectiontitle{Outline}
\AtBeginSection[]{
\title{\insertsectionhead}
{
\definecolor{white}{rgb}{0.776,0.357,0.157}
\definecolor{iqss@orange}{rgb}{1,1,1}
\ifnum \insertmainframenumber > \insertframenumber
\frame{
\frametitle{\iqsssectiontitleheader}
\tableofcontents[currentsection]
}
\else
\frame{
\frametitle{Backup Slides}
\tableofcontents[sectionstyle=shaded/shaded,subsectionstyle=shaded/shaded/shaded]
}
\fi
}
}
\AtBeginSubsection[]{}
%%
$if(title)$
\title[$shorttitle$]{$title$}
$endif$
$if(subtitle)$
\subtitle{$subtitle$}
$endif$
$if(author)$
\author[
$if(short-author)$
$for(short-author)$$short-author$$sep$ \and $endfor$
$else$
$for(author)$$author$$sep$ \and $endfor$
$endif$
]{$for(author)$$author$$sep$ \and $endfor$}
$endif$
$if(institute)$
\institute[
$if(short-institute)$
$for(short-institute)$$short-institute$$sep$ \and $endfor$
$endif$
]{
$if(department)$
$for(department)$$department$$sep$ \and $endfor$ \\
$endif$
$for(institute)$$institute$$sep$ \and $endfor$
$if(email)$
\\ $for(email)$ \href{mailto:$email$}{\nolinkurl{$email$}}$sep$ \and $endfor$
$endif$
}
$endif$
\date[
$if(short-date)$
$short-date$
$else$
$date$
$endif$]{
$if(date)$
$date$
$if(license)$
\\ \vspace{5mm}
$endif$
$endif$
$if(license)$
{\scriptsize $license$}
$endif$
}
\begin{document}
% Hide progress bar and footline on titlepage
$if(title)$
\begin{frame}[plain]
\titlepage
\end{frame}
$endif$
$for(include-before)$
$include-before$
$endfor$
$if(toc)$
\begin{frame}
\tableofcontents[hideallsubsections]
\end{frame}
$endif$
$body$
$if(natbib)$
$if(bibliography)$
$if(biblio-title)$
$if(book-class)$
\renewcommand\bibname{$biblio-title$}
$else$
\renewcommand\refname{$biblio-title$}
$endif$
$endif$
\begin{frame}[allowframebreaks]{$biblio-title$}
\bibliographytrue
\bibliography{$for(bibliography)$$bibliography$$sep$,$endfor$}
\end{frame}
$endif$
$endif$
$if(biblatex)$
\begin{frame}[allowframebreaks]{$biblio-title$}
\bibliographytrue
\printbibliography[heading=none]
\end{frame}
$endif$
$for(include-after)$
$include-after$
$endfor$
\end{document}

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inst/rmarkdown/templates/iqss/skeleton/beamercolorthemeiqss.sty Normal file
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% Modified from beamerclorthemedefault.sty.
% Original work Copyright 2007 by Till Tantau
% Copyright 2012,2015 by Vedran Mileti\'c, Joseph Wright
%
% This file may be distributed and/or modified
%
% 1. under the LaTeX Project Public License and/or
% 2. under the GNU Public License.
%
\RequirePackage{listings}
\mode<presentation>
% - Main color BLUE (Title, bullets, arrows)
% - First accent ORANGE (math, or RED)
% - Second accent PURPLE
% - Third accent GREEN
% - Fourth accent RED
% - Fifth accent YELLOW
% red green blue
%Orange 0.776 0.357 0.157
%Blue 0.208 0.380 1.000
%Purple 0.471 0.000 0.471
%Yellow 0.808 0.616 0.133
%Green 0.341 0.553 0.090
\definecolor{iqss@orange}{rgb}{0.776,0.357,0.157}
\definecolor{iqss@blue}{rgb}{0.19,0.55,0.91}
\definecolor{iqss@purple}{rgb}{0.471, 0.000 0.471}
\definecolor{iqss@yellow}{rgb}{0.808, 0.616 0.133}
\definecolor{iqss@green}{rgb}{0.341, 0.553 0.090}
\definecolor{iqss@red}{rgb}{0.65, 0.11 0.19}
\definecolor{iqss@gray}{rgb}{0.95,0.95,0.95}
\lstset{ %
basicstyle=\ttfamily\footnotesize,
backgroundcolor=\color{iqss@gray},
commentstyle=\color{iqss@green},
keywordstyle=\color{iqss@blue},
stringstyle=\color{iqss@purple},
keepspaces=true,
showspaces=false,
showstringspaces=false,
showtabs=false
}
\newcommand<>{\alertb}[1]{\setbeamercolor{alerted text}{fg=iqss@red}%
\begin{alertenv}#2\relax#1\end{alertenv}%
\setbeamercolor{alerted text}{fg=iqss@blue}%
}
\newcommand<>{\alertc}[1]{\setbeamercolor{alerted text}{fg=iqss@green}%
\begin{alertenv}#2\relax#1\end{alertenv}%
\setbeamercolor{alerted text}{fg=iqss@blue}%
}
\newcommand<>{\alertd}[1]{\setbeamercolor{alerted text}{fg=iqss@yellow}%
\begin{alertenv}#2\relax#1\end{alertenv}%
\setbeamercolor{alerted text}{fg=iqss@blue}%
}
\newcommand<>{\alerte}[1]{\setbeamercolor{alerted text}{fg=iqss@purple}%
\begin{alertenv}#2\relax#1\end{alertenv}%
\setbeamercolor{alerted text}{fg=iqss@blue}%
}
\setbeamercolor{normal text}{fg=black,bg=white}
\setbeamercolor{alerted text}{fg=iqss@blue}
\setbeamercolor{example text}{fg=iqss@green}
\setbeamercolor{structure}{fg=iqss@orange}
\setbeamercolor{background canvas}{parent=normal text}
\setbeamercolor{background}{parent=background canvas}
\setbeamercolor{palette primary}{use=structure,fg=structure.fg}
\setbeamercolor{palette secondary}{use=structure,fg=structure.fg!75!black}
\setbeamercolor{palette tertiary}{use=structure,fg=structure.fg!50!black}
\setbeamercolor{palette quaternary}{fg=black}
\setbeamercolor{palette sidebar primary}{use=normal text,fg=normal text.fg}
\setbeamercolor{palette sidebar secondary}{use=structure,fg=structure.fg}
\setbeamercolor{palette sidebar tertiary}{use=normal text,fg=normal text.fg}
\setbeamercolor{palette sidebar quaternary}{use=structure,fg=structure.fg}
\setbeamercolor{math text}{}
\setbeamercolor{math text inlined}{parent=math text}
\setbeamercolor{math text displayed}{parent=math text}
\setbeamercolor{normal text in math text}{}
\setbeamercolor{local structure}{parent=structure}
\setbeamercolor{titlelike}{parent=structure}
%Edd \setbeamercolor{title}{parent=titlelike,fg=white,bg=iqss@orange}
\setbeamercolor{title}{parent=titlelike,fg=iqss@orange}
\setbeamercolor{title in head/foot}{parent=palette quaternary}
\setbeamercolor{title in sidebar}{parent=palette sidebar quaternary}
\setbeamercolor{subtitle}{parent=title}
\setbeamercolor{author}{}
\setbeamercolor{author in head/foot}{parent=palette primary}
\setbeamercolor{author in sidebar}{use=palette sidebar tertiary,fg=palette sidebar tertiary.fg}
\setbeamercolor{institute}{}
\setbeamercolor{institute in head/foot}{parent=palette tertiary}
\setbeamercolor{institute in sidebar}{use=palette sidebar tertiary,fg=palette sidebar tertiary.fg}
\setbeamercolor{date}{}
\setbeamercolor{date in head/foot}{parent=palette secondary}
\setbeamercolor{date in sidebar}{use=palette sidebar tertiary,fg=palette sidebar tertiary.fg}
\setbeamercolor{titlegraphic}{}
\setbeamercolor{part name}{}
\setbeamercolor{part title}{parent=title}
\setbeamercolor{section name}{}
\setbeamercolor{section title}{parent=title}
\setbeamercolor{section in toc}{parent=structure}
\setbeamercolor{section in toc shaded}{parent=section in toc}
\setbeamercolor{section in head/foot}{parent=palette tertiary}
\setbeamercolor{section in sidebar}{parent=palette sidebar secondary}
\setbeamercolor{section in sidebar shaded}{use=section in sidebar,fg=section in sidebar.fg!40!bg}
\setbeamercolor{section number projected}{parent=item projected}
\setbeamercolor{subsection name}{}
\setbeamercolor{subsection title}{parent=titlelike}
\setbeamercolor{subsection in toc}{}
\setbeamercolor{subsection in toc shaded}{parent=subsection in toc}
\setbeamercolor{subsection in head/foot}{parent=palette secondary}
\setbeamercolor{subsection in sidebar}{parent=palette sidebar primary}
\setbeamercolor{subsection in sidebar shaded}{use=subsection in sidebar,fg=subsection in sidebar.fg!40!bg}
\setbeamercolor{subsection number projected}{parent={subitem projected}}
\setbeamercolor{subsubsection in toc}{parent=subsection in toc}
\setbeamercolor{subsubsection in toc shaded}{parent=subsubsection in toc}
\setbeamercolor{subsubsection in head/foot}{parent=subsection in head/foot}
\setbeamercolor{subsubsection in sidebar}{parent=subsection in sidebar}
\setbeamercolor{subsubsection in sidebar shaded}{parent=subsection in sidebar shaded}
\setbeamercolor{subsubsection number projected}{parent=subsubitem projected}
\setbeamercolor{headline}{}
\setbeamercolor{footline}{}
\setbeamercolor{sidebar}{}
\setbeamercolor{sidebar left}{parent=sidebar}
\setbeamercolor{sidebar right}{parent=sidebar}
\setbeamercolor{logo}{parent=palette secondary}
\setbeamercolor{frametitle}{parent=titlelike}
\setbeamercolor{framesubtitle}{parent=frametitle}
\setbeamercolor{frametitle right}{parent=frametitle}
\setbeamercolor{caption}{}
\setbeamercolor{caption name}{parent=structure}
\setbeamercolor{button}{use=local structure,bg=local structure.fg!50!bg,fg=white}
\setbeamercolor{button border}{use=button,fg=button.bg}
\setbeamercolor{navigation symbols}{use=structure,fg=structure.fg!40!bg}
\setbeamercolor{navigation symbols dimmed}{use=structure,fg=structure.fg!20!bg}
\setbeamercolor{mini frame}{parent=section in head/foot}
\setbeamercolor{block body}{}
\setbeamercolor{block body alerted}{}
\setbeamercolor{block body example}{}
\setbeamercolor{block title}{parent=structure,bg=iqss@gray}
\setbeamercolor{block title alerted}{parent=alerted text,bg=iqss@gray}
\setbeamercolor{block title example}{parent=example text,bg=iqss@gray}
\setbeamercolor{item}{parent=local structure}
\setbeamercolor{subitem}{parent=item}
\setbeamercolor{subsubitem}{parent=subitem}
\setbeamercolor{item projected}{parent=item,use=item,fg=white,bg=item.fg}
\setbeamercolor{subitem projected}{parent=item projected}
\setbeamercolor{subsubitem projected}{parent=subitem projected}
\setbeamercolor{enumerate item}{parent=item}
\setbeamercolor{enumerate subitem}{parent=subitem}
\setbeamercolor{enumerate subsubitem}{parent=subsubitem}
\setbeamercolor{itemize item}{parent=item}
\setbeamercolor{itemize subitem}{parent=subitem}
\setbeamercolor{itemize subsubitem}{parent=subsubitem}
\setbeamercolor{itemize/enumerate body}{}
\setbeamercolor{itemize/enumerate subbody}{}
\setbeamercolor{itemize/enumerate subsubbody}{}
\setbeamercolor{description item}{parent=item}
\setbeamercolor{description body}{}
\setbeamercolor{bibliography item}{parent=item}
\setbeamercolor{bibliography entry author}{use=structure,fg=structure.fg}
\setbeamercolor{bibliography entry title}{use=normal text,fg=normal text.fg}
\setbeamercolor{bibliography entry location}{use=structure,fg=structure.fg!65!bg}
\setbeamercolor{bibliography entry note}{use=structure,fg=structure.fg!65!bg}
\setbeamercolor{separation line}{}
\setbeamercolor{upper separation line head}{parent=separation line}
\setbeamercolor{middle separation line head}{parent=separation line}
\setbeamercolor{lower separation line head}{parent=separation line}
\setbeamercolor{upper separation line foot}{parent=separation line}
\setbeamercolor{middle separation line foot}{parent=separation line}
\setbeamercolor{lower separation line foot}{parent=separation line}
\setbeamercolor{abstract}{}
\setbeamercolor{abstract title}{parent=structure}
\setbeamercolor{verse}{}
\setbeamercolor{quotation}{}
\setbeamercolor{quote}{parent=quotation}
%\setbeamercolor{page number in head/foot}{fg=fg!50!bg}
\setbeamercolor{page number in head/foot}{fg=iqss@orange}
\setbeamercolor{qed symbol}{parent=structure}
\setbeamercolor{note page}{bg=white!90!black, fg=black}
\setbeamercolor{note title}{bg=white!80!black, fg=black}
\setbeamercolor{note date}{parent=note title}
\mode
<all>

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inst/rmarkdown/templates/iqss/skeleton/beamerfontthemeiqss.sty Normal file
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\usefonttheme{professionalfonts}
\RequirePackage{fontspec}
\setmainfont{Libertinus Serif}
\setsansfont{Libertinus Sans}
\setmathfont{Libertinus Math}
\setmonofont{Libertinus Mono}

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inst/rmarkdown/templates/iqss/skeleton/beamerthemeiqss.sty Normal file
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% Modified from beamerthemedefault.sty.
% Original work Copyright 2007 by Till Tantau
%
% This file may be distributed and/or modified
%
% 1. under the LaTeX Project Public License and/or
% 2. under the GNU Public License.
%
% Requirement
\RequirePackage{tikz}
%\RequirePackage{amsmath} % DEdd: side-effects, and loaded later
%\RequirePackage{unicode-math} % DEdd: side-effects
\mode<presentation>
\hypersetup{colorlinks=true,allcolors=iqss@orange}
\def \iqsssectiontitleheader {}
\newcommand{\iqsssectiontitle}[1]{
\def \iqsssectiontitleheader{#1}
}
\@ifundefined{insertmainframenumber}
{%
% \insertmainframenumber not defined
\newcommand{\insertmainframenumber}{\inserttotalframenumber}
}
{%
% \insertmainframenumber already defined
}%
%\setbeamertemplate{footline}[frame number]
\setbeamertemplate{footline}
{ \usebeamercolor[fg]{page number in head/foot}%
\usebeamerfont{page number in head/foot}%
\hspace{1em}\insertsectionhead%
\hfill%
\insertframenumber\,/\,\hyperlinkappendixstart{\insertmainframenumber}
\ifnum \thepage = \insertframeendpage{\small .}\else{\phantom{\small .}}\fi
\hspace{1em}
\vskip2pt%
}
% Edd
\titlegraphic{\includegraphics[width=\paperwidth]{header.png}}
%This works: \titlegraphic{\includegraphics[width=0.4in]{illinois_logo_tm.eps}}
\setbeamertemplate{title page}
{
% \node[anchor=north west,xshift=-1.2mm,yshift=1.2mm] at (current page.north west){%
\begin{tikzpicture}[remember picture,overlay]
%\node[anchor=north east] at (current page.north east){%
\node[anchor=north west,xshift=-1.2mm,yshift=1.2mm] at (current page.north west){%
\noindent\inserttitlegraphic\par
};
\end{tikzpicture}
\vskip1em
\vbox{}
\begingroup
\centering
\usebeamercolor[fg]{titlegraphic}
\begin{beamercolorbox}[sep=8pt,center]{title}
\usebeamerfont{title}\inserttitle\par%
\ifx\insertsubtitle\@empty%
\else%
\vskip0.25em%
{\usebeamerfont{subtitle}\usebeamercolor[fg]{subtitle}\insertsubtitle\par}%
\fi%
\end{beamercolorbox}%
\vskip1em\par
\begin{beamercolorbox}[sep=8pt,center]{author}
\usebeamerfont{author}\insertauthor
\end{beamercolorbox}
\begin{beamercolorbox}[sep=8pt,center]{institute}
\usebeamerfont{institute}\insertinstitute
\end{beamercolorbox}
\begin{beamercolorbox}[sep=8pt,center]{date}
\usebeamerfont{date}\insertdate
\end{beamercolorbox}
\endgroup
\vfill
}
\setbeamertemplate{navigation symbols}{}
\setbeamertemplate{blocks}[rounded][shadow=true]
\usefonttheme{iqss}
\usecolortheme{iqss}
\useinnertheme{default}
\useoutertheme{default}
\setbeamertemplate{itemize items}[circle]
\AtBeginSection[]{
\title{\insertsectionhead}
{
\definecolor{white}{rgb}{0.776,0.357,0.157}
\definecolor{iqss@orange}{rgb}{1,1,1}
\ifnum \insertmainframenumber > \insertframenumber
\frame{
\frametitle{\iqsssectiontitleheader}
\tableofcontents[currentsection]
}
\else
\frame{
\frametitle{Backup Slides}
\tableofcontents[sectionstyle=shaded/shaded,subsectionstyle=shaded/shaded/shaded]
}
\fi
}
}
\mode
<all>
% Local Variables:
% TeX-engine: xetex
% End:

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---
author: Gary King and Ista Zahn
classoption: compress
fontsize: 12pt
title: Beamer Class Demonstration
date: \today
institute: IQSS
output: binb::iqss
---
# Beamer Features
## Some of Gary's Examples
### What's this course about?
::: incremental
- \alert{Specific statistical methods for many research problems}
- How to learn (or create) new methods
- Inference: \underline{Using facts you know to learn about
facts you don't know}
- \alert{How to write a publishable scholarly paper}
- \alert{All the practical tools of research} --- theory,
applications, simulation, programming, word processing, plumbing,
whatever is useful
- $\leadsto$ \alert{Outline and class materials:}
- \mbox{{\huge\parbox[b][.5in][t]{1in}{\alert{j.mp/G2001}}}
$\qquad\qquad$\includegraphics[width=.95in]{figs/phbAr.png}}
- The syllabus gives topics, not a weekly plan.
- We will go as fast as possible subject to everyone following along
- We cover different amounts of material each week
:::
### How much math will you scare us with?
- All math requires two parts: \alertb{proof} and \alertb{concepts \& intuition}
- Different classes emphasize:
- \alert{Baby Stats}: dumbed down proofs, vague intuition
- \alert{Math Stats}: rigorous mathematical proofs
- \alert{\underline{Practical Stats}}: deep concepts and intuition, proofs when needed
- Goal: how to do empirical research, in depth
- Use rigorous statistical theory --- when needed
- Insure we understand the intuition --- always
- Always traverse from theoretical foundations to practical applications
- Includes ``how to'' computation
- $\leadsto$ Fewer proofs, more concepts, better practical knowledge
- Do you have the background for this class?
. . .
\alert{A Test: What's this?
\begin{align*}
b=(X'X)^{-1}X'y
\end{align*} }
### Systematic Components: Examples
\includegraphics[width=8cm]{figs/functionalForms}
- \alertb{$E(Y_i) \equiv \mu_i = X_i\beta = \beta_0 +
\beta_1X_{1i} +\dots+\beta_kX_{ki}$}
- \alertc{$\Pr(Y_i=1) \equiv \pi_i =
\frac{1}{1+e^{-x_i\beta}}$}
- \alertd{$V(Y_i)\equiv \sigma_i^2 = e^{x_i\beta}$}
- Interpretation:
- Each is a \alert{class of functional forms}
- Set $\beta$ and it picks out one \alert{member of the class}
- \alert{$\beta$} in each is an ``effect parameter'' vector,
with different meaning
### Negative Binomial Derivation
\uncover<+->{Recall:}
\begin{equation*}
\uncover<+->{\Pr(A|B)=\frac{\Pr(AB)}{\Pr(B)} \implies
\alertb{\Pr(AB)}=\alerte{\Pr(A|B)}\alertd{\Pr(B)}}
\end{equation*}
\alertb<1-1>{one}
\alertc<2-2>{two}
\alertd<3-3>{three}
\begin{align*}
\uncover<+->{\text{NegBin}(y|\phi,\sigma^2) &= \int_0^\infty
\alerte{\text{Poisson}(y|\lambda)}
\times\alertd{\text{gamma}(\lambda|\phi,\sigma^2)}d\lambda\\}
\uncover<+->{&= \int_0^\infty
\alertb{\P(y,\lambda|\phi,\sigma^2) }d\lambda\\}
\uncover<+->{&=
\frac{\Gamma\left(\frac{\phi}{\sigma^2-1}+y_i\right)}
{y_i!\Gamma\left(\frac{\phi}{\sigma^2-1}\right)}
\left(\frac{\sigma^2-1}{\sigma^2}\right)^{y_i}
\left(\sigma^2\right)^{\frac{-\phi}{\sigma^2-1}}}
\end{align*}
# Other Features
## Structural Features
### Structural Features
#### Levels of Structure
- usual \LaTeX\ \textbackslash\ section, \textbackslash\ subsection commands
- `frame` environments provide slides
- `block` environments divide slides into logical sections
- `columns` environments divide slides vertically (example later)
- overlays (\`a la prosper) change content of slides dynamically
#### \alertc{Overlay Alerts}
On the first overlay, \alert<1>{this text} is highlighted (or \emph{alerted}).
On the second, \alert<2>{this text} is.
### Code blocks
\footnotesize
```r
# Say hello in R
hello <- function(name) paste("hello", name)
```
. . .
```python
# Say hello in Python
def hello(name):
return("Hello" + " " + name)
```
. . .
```haskell
-- Say hello in Haskell
hello name = "Hello" ++ " " ++ name
```
. . .
```c
/* Say hello in C */
#include <stdio.h>
int main()
{
char name[256];
fgets(name, sizeof(name), stdin);
printf("Hello %s", name);
return(0);
}
```
\normalsize
### Alerts
- First level \alert{alert}
- Second level \alertb{alert}
- Third level \alertc{alert}
- Fourth level \alertd{alert}
- Fifth level \alerte{alert}
# More Features
## Blocks
### Other Features
#### Levels of Structure
- Clean, extensively customizable visual style
- Hyperlinks ([http://github.com/izahn/iqss-beamer-theme](click here_)
- No weird scaling prosper
- slides are 96~mm~$\times$~128~mm
- text is 10-12pt on slide
- slide itself magnified with Adobe Reader/xpdf/gv to fill screen
- pgf graphics framework easy to use
- include external JPEG/PNG/PDF figures
- output directly to pdf: no PostScript hurdles
- detailed User's Manual (with good presentation advice, too)
### Theorems and Proofs
\framesubtitle{The proof uses \textit{reductio ad absurdum}.}
#### Theorem
There is no largest prime number.
#### Proof
> - Suppose $p$ were the largest prime number.
> - Let $q$ be the product of the first $p$ numbers.
> - Then $q+1$ is not divisible by any of them.
> - But $q + 1$ is greater than $1$, thus divisible by some prime
number not in the first $p$ numbers. \qedhere
### Blocks
#### Normal block
A \alert{set} consists of elements.
#### \alert{Alert block}
$2=2$.
#### \alertc{Example block}
The set $\{1,2,3,5\}$ has four elements.
# Appendix
---
Backup Slides
<!-- \subsection{More stuff} -->
---
Details
---
Text omitted in main talk.
<!-- \subsection{Even more additional material} -->
---
More details
---
Even more details

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name: Binb is not Beamer - IQSS (pdf)
description: A custom R Markdown Beamer presentation theme.
create_dir: true

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\newif\ifbibliography
$if(natbib)$
\usepackage{natbib}
\usepackage[round]{natbib}
\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
$endif$
$if(biblatex)$